Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 4xdo
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2xmlRCSB PDB    PDBbind348aa, >2XML_1|Chains... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1h2kRCSB PDB    PDBbindOGA
2oq6RCSB PDB    PDBbindOGA
2qrlRCSB PDB    PDBbindOGA
2xmlRCSB PDB    PDBbindOGA
3hqrRCSB PDB    PDBbindOGA
4idzRCSB PDB    PDBbindOGA
4nhxRCSB PDB    PDBbindOGA
4nrpRCSB PDB    PDBbindOGA
5a1fRCSB PDB    PDBbindOGA
Entry Information
PDB ID4xdo
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameLysine-specific demethylase 4C
Ligand NameOGA
EC.Number E.C.1.14.11.-
Resolution 1.97(Å)
Affinity (Kd/Ki/IC50)IC50=84uM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) J Biomol Screen Vol. 20: pp. 810-820
Ligand Properties
Formula C4H5NO5
Molecular Weight 147.086
Exact Mass 147.017
No. of atoms 15
No. of bonds 14
Polar Surface Area 103.7
LOGP Value 0.63      (Computed with XLOGP3)
-1.34      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9H3R0  
Entrez Gene IDNCBI Entrez Gene ID: 23081  
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com