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Related entries of code: 2oq6
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2vd7RCSB PDB    PDBbind381aa, >2VD7_1|Chains... at 100%
2wwjRCSB PDB    PDBbind348aa, >2WWJ_1|Chains... at 99%
2ybkRCSB PDB    PDBbind381aa, >2YBK_1|Chains... at 100%
3njyRCSB PDB    PDBbind381aa, >3NJY_1|Chains... at 100%
3pdqRCSB PDB    PDBbind381aa, >3PDQ_1|Chains... at 100%
4bisRCSB PDB    PDBbind381aa, >4BIS_1|Chains... at 100%
4uraRCSB PDB    PDBbind360aa, >4URA_1|Chains... at 100%
5anqRCSB PDB    PDBbind359aa, >5ANQ_1|Chains... at 100%
5f2sRCSB PDB    PDBbind360aa, >5F2S_1|Chains... at 100%
5f2wRCSB PDB    PDBbind360aa, >5F2W_1|Chains... at 100%
5f32RCSB PDB    PDBbind360aa, >5F32_1|Chains... at 100%
5f37RCSB PDB    PDBbind360aa, >5F37_1|Chains... at 100%
5f39RCSB PDB    PDBbind360aa, >5F39_1|Chains... at 100%
5f3cRCSB PDB    PDBbind360aa, >5F3C_1|Chains... at 100%
5f3eRCSB PDB    PDBbind360aa, >5F3E_1|Chains... at 100%
5f3gRCSB PDB    PDBbind360aa, >5F3G_1|Chains... at 100%
5f3iRCSB PDB    PDBbind360aa, >5F3I_1|Chains... at 100%
5f5iRCSB PDB    PDBbind363aa, >5F5I_1|Chains... at 100%
5vgiRCSB PDB    PDBbind370aa, >5VGI_1|Chains... at 98%
6h4yRCSB PDB    PDBbind360aa, >6H4Y_1|Chains... at 100%
6h4xRCSB PDB    PDBbind360aa, >6H4X_1|Chains... at 100%
6h4wRCSB PDB    PDBbind360aa, >6H4W_1|Chains... at 100%
6h4vRCSB PDB    PDBbind360aa, >6H4V_1|Chains... at 100%
6h4uRCSB PDB    PDBbind360aa, >6H4U_1|Chains... at 100%
6h4tRCSB PDB    PDBbind360aa, >6H4T_1|Chains... at 100%
6h4sRCSB PDB    PDBbind360aa, >6H4S_1|Chains... at 100%
6h4rRCSB PDB    PDBbind360aa, >6H4R_1|Chains... at 100%
6h4qRCSB PDB    PDBbind360aa, >6H4Q_1|Chains... at 100%
6h4pRCSB PDB    PDBbind360aa, >6H4P_1|Chains... at 100%
6h4oRCSB PDB    PDBbind360aa, >6H4O_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1h2kRCSB PDB    PDBbindOGA
2qrlRCSB PDB    PDBbindOGA
2xmlRCSB PDB    PDBbindOGA
3hqrRCSB PDB    PDBbindOGA
4idzRCSB PDB    PDBbindOGA
4nhxRCSB PDB    PDBbindOGA
4nrpRCSB PDB    PDBbindOGA
4xdoRCSB PDB    PDBbindOGA
5a1fRCSB PDB    PDBbindOGA
Entry Information
PDB ID2oq6
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namehuman JMJD2A (jumonji domain containing 2A, KDM4A)
Ligand NameOGA
EC.Number E.C.1.14.11.-
Resolution 2(Å)
Affinity (Kd/Ki/IC50)IC50=250uM
Release Year2007
Protein/NA SequenceCheck fasta file
Primary Reference (2011) J. Med. Chem., Vol.54, pp.8236-8250
Ligand Properties
Formula C4H5NO5
Molecular Weight 147.086
Exact Mass 147.017
No. of atoms 15
No. of bonds 14
Polar Surface Area 103.7
LOGP Value 0.63      (Computed with XLOGP3)
-1.34      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O75164  P68431  
Entrez Gene IDNCBI Entrez Gene ID: 9682  8350  8351  8352  8353  8354  8355  8356  8357  8358  8968  
ASDInformation of known allosteric effects of PDB entries
 
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