Browse entries in the PDBbind-CN Database

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Related entries of code: 6ipm
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6iplRCSB PDB    PDBbind356aa, >6IPL_1|Chain... at 100%
6ipkRCSB PDB    PDBbind356aa, >6IPK_1|Chain... at 100%
6ipjRCSB PDB    PDBbind356aa, >6IPJ_1|Chain... at 100%
6ipiRCSB PDB    PDBbind356aa, >6IPI_1|Chain... at 100%
6iphRCSB PDB    PDBbind356aa, >6IPH_1|Chain... at 100%
6ak9RCSB PDB    PDBbind356aa, >6AK9_1|Chain... at 100%
6ak8RCSB PDB    PDBbind356aa, >6AK8_1|Chain... at 100%
6ak6RCSB PDB    PDBbind356aa, >6AK6_1|Chain... at 100%
6aehRCSB PDB    PDBbind356aa, >6AEH_1|Chain... at 100%
6aecRCSB PDB    PDBbind356aa, >6AEC_1|Chain... *
6ak5RCSB PDB    PDBbind356aa, >6AK5_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
6ipiRCSB PDB    PDBbindDCP
Entry Information
PDB ID6ipm
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameDNA-directed DNA/RNA polymerase mu
Ligand NameDCP
EC.Number E.C.2.7.7.7
Resolution 1.72(Å)
Affinity (Kd/Ki/IC50)Kd=206uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) J.Am.Chem.Soc. Vol. 141: pp. 8489-8502
Ligand Properties
Formula C9H20N3O13P3
Molecular Weight 471.189
Exact Mass 471.021
No. of atoms 48
No. of bonds 49
Polar Surface Area 301.69
LOGP Value -4.31      (Computed with XLOGP3)
-2.50      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 9
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 16
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9NP87  
Entrez Gene IDNCBI Entrez Gene ID: 27434  
ASDInformation of known allosteric effects of PDB entries
 
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