Browse entries in the PDBbind-CN Database

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Related entries of code: 6miy
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1fo0RCSB PDB    PDBbind99aa, >1FO0_2|Chain... at 98%
1fzjRCSB PDB    PDBbind99aa, >1FZJ_2|Chain... at 98%
1fzkRCSB PDB    PDBbind99aa, >1FZK_2|Chain... at 98%
1fzmRCSB PDB    PDBbind99aa, >1FZM_2|Chain... at 98%
1fzoRCSB PDB    PDBbind99aa, >1FZO_2|Chain... at 98%
1g6rRCSB PDB    PDBbind99aa, >1G6R_4|Chains... at 98%
1g7pRCSB PDB    PDBbind99aa, >1G7P_2|Chain... at 98%
1g7qRCSB PDB    PDBbind99aa, >1G7Q_2|Chain... at 98%
1inqRCSB PDB    PDBbind99aa, >1INQ_2|Chain... at 98%
1jufRCSB PDB    PDBbind99aa, >1JUF_2|Chain... at 98%
1legRCSB PDB    PDBbind99aa, >1LEG_2|Chain... at 98%
1lekRCSB PDB    PDBbind99aa, >1LEK_2|Chain... at 98%
1nezRCSB PDB    PDBbind99aa, >1NEZ_2|Chain... at 98%
1p1zRCSB PDB    PDBbind99aa, >1P1Z_2|Chain... at 98%
1p4lRCSB PDB    PDBbind99aa, >1P4L_2|Chain... at 100%
2clvRCSB PDB    PDBbind99aa, >2CLV_2|Chains... at 98%
2fo4RCSB PDB    PDBbind99aa, >2FO4_2|Chain... at 98%
2q7yRCSB PDB    PDBbind99aa, >2Q7Y_2|Chains... at 100%
3arbRCSB PDB    PDBbind99aa, >3ARB_2|Chain... at 100%
3ardRCSB PDB    PDBbind99aa, >3ARD_2|Chain... at 100%
3areRCSB PDB    PDBbind99aa, >3ARE_2|Chain... at 100%
3arfRCSB PDB    PDBbind99aa, >3ARF_2|Chain... at 100%
3argRCSB PDB    PDBbind99aa, >3ARG_2|Chain... at 100%
3c8kRCSB PDB    PDBbind99aa, >3C8K_2|Chain... at 100%
3dmmRCSB PDB    PDBbind100aa, >3DMM_2|Chain... *
3g08RCSB PDB    PDBbind99aa, >3G08_2|Chain... at 100%
3he6RCSB PDB    PDBbind99aa, >3HE6_2|Chain... at 100%
3he7RCSB PDB    PDBbind99aa, >3HE7_2|Chain... at 100%
3ilqRCSB PDB    PDBbind99aa, >3ILQ_2|Chain... at 100%
3o8xRCSB PDB    PDBbind99aa, >3O8X_2|Chain... at 100%
3o9wRCSB PDB    PDBbind99aa, >3O9W_2|Chain... at 100%
3p9lRCSB PDB    PDBbind99aa, >3P9L_2|Chains... at 98%
3p9mRCSB PDB    PDBbind99aa, >3P9M_2|Chains... at 98%
3pabRCSB PDB    PDBbind99aa, >3PAB_2|Chains... at 98%
3quxRCSB PDB    PDBbind99aa, >3QUX_2|Chain... at 100%
3quyRCSB PDB    PDBbind99aa, >3QUY_2|Chain... at 100%
3quzRCSB PDB    PDBbind99aa, >3QUZ_2|Chain... at 100%
3rtqRCSB PDB    PDBbind99aa, >3RTQ_2|Chain... at 100%
3rugRCSB PDB    PDBbind99aa, >3RUG_2|Chains... at 100%
3rzcRCSB PDB    PDBbind99aa, >3RZC_2|Chain... at 100%
3scmRCSB PDB    PDBbind99aa, >3SCM_2|Chain... at 100%
3sdaRCSB PDB    PDBbind99aa, >3SDA_2|Chain... at 100%
3sdcRCSB PDB    PDBbind99aa, >3SDC_2|Chain... at 100%
3sddRCSB PDB    PDBbind99aa, >3SDD_2|Chain... at 100%
3tn0RCSB PDB    PDBbind99aa, >3TN0_2|Chain... at 100%
3to4RCSB PDB    PDBbind99aa, >3TO4_2|Chain... at 100%
3tvmRCSB PDB    PDBbind99aa, >3TVM_2|Chains... at 100%
3ubxRCSB PDB    PDBbind99aa, >3UBX_2|Chains... at 100%
4ei5RCSB PDB    PDBbind99aa, >4EI5_2|Chains... at 100%
4elmRCSB PDB    PDBbind99aa, >4ELM_2|Chains... at 100%
4ihoRCSB PDB    PDBbind99aa, >4IHO_2|Chains... at 98%
4pg9RCSB PDB    PDBbind100aa, >4PG9_2|Chain... at 99%
4pgbRCSB PDB    PDBbind100aa, >4PGB_2|Chains... at 99%
4pgdRCSB PDB    PDBbind100aa, >4PGD_2|Chain... at 99%
4pgeRCSB PDB    PDBbind100aa, >4PGE_2|Chain... at 99%
4y16RCSB PDB    PDBbind99aa, >4Y16_2|Chain... at 100%
4zakRCSB PDB    PDBbind99aa, >4ZAK_2|Chain... at 100%
5ivxRCSB PDB    PDBbind100aa, >5IVX_2|Chain... at 100%
5swsRCSB PDB    PDBbind99aa, >5SWS_2|Chain... at 100%
5swzRCSB PDB    PDBbind99aa, >5SWZ_2|Chains... at 100%
5tw2RCSB PDB    PDBbind99aa, >5TW2_2|Chain... at 100%
5tw5RCSB PDB    PDBbind97aa, >5TW5_2|Chain... at 100%
6bnkRCSB PDB    PDBbind99aa, >6BNK_2|Chains... at 100%
6bnlRCSB PDB    PDBbind99aa, >6BNL_2|Chains... at 100%
6oorRCSB PDB    PDBbind99aa, >6OOR_2|Chain... at 100%
6mssRCSB PDB    PDBbind99aa, >6MSS_4|Chain... at 100%
6mjjRCSB PDB    PDBbind99aa, >6MJJ_4|Chain... at 100%
6mjiRCSB PDB    PDBbind99aa, >6MJI_4|Chain... at 100%
6mjaRCSB PDB    PDBbind99aa, >6MJA_4|Chain... at 100%
6mj4RCSB PDB    PDBbind99aa, >6MJ4_4|Chain... at 100%
6mivRCSB PDB    PDBbind99aa, >6MIV_4|Chain... at 100%
6cxfRCSB PDB    PDBbind98aa, >6CXF_2|Chain... at 100%
5wlgRCSB PDB    PDBbind99aa, >5WLG_2|Chains... at 100%
6mjqRCSB PDB    PDBbind99aa, >6MJQ_4|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID6miy
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameAntigen-presenting glycoprotein CD1d1
Ligand NameJTV
EC.Number E.C.-.-.-.-
Resolution 2.75(Å)
Affinity (Kd/Ki/IC50)Kd=18.5nM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) ChemMedChem Vol. 14: pp. 147-168
Ligand Properties
Formula C57H105NO9
Molecular Weight 948.445
Exact Mass 947.779
No. of atoms 172
No. of bonds 173
Polar Surface Area 157.94
LOGP Value 17.52      (Computed with XLOGP3)
13.10      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 6
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 53
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A0A0B4J1J9  A0N8J3  A2NTY6  K7N5M3  A0A5B9  P01887  P11609  
Entrez Gene IDNCBI Entrez Gene ID: 12010  12479  
ASDInformation of known allosteric effects of PDB entries
 
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