Browse entries in the PDBbind-CN Database

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Related entries of code: 6npm
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6nppRCSB PDB    PDBbind134aa, >6NPP_2|Chain... at 100%
6npiRCSB PDB    PDBbind141aa, >6NPI_1|Chains... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID6npm
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameEpstein-Barr Virus Nuclear Antigen-1, EBNA1
Ligand NameKVD
EC.Number E.C.-.-.-.-
Resolution 1.6(Å)
Affinity (Kd/Ki/IC50)IC50=110uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Sci Transl Med Vol. 11: pp.eaau5612
Ligand Properties
Formula C14H9NO2
Molecular Weight 223.227
Exact Mass 223.063
No. of atoms 26
No. of bonds 27
Polar Surface Area 50.19
LOGP Value 3.48      (Computed with XLOGP3)
2.18      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 1
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P03211  
Entrez Gene IDNCBI Entrez Gene ID: 3783709  3783774  
ASDInformation of known allosteric effects of PDB entries
 
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