Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 6npp
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6npmRCSB PDB    PDBbind141aa, >6NPM_1|Chains... at 98%
6npiRCSB PDB    PDBbind141aa, >6NPI_1|Chains... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID6npp
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameEpstein-Barr Virus Nuclear Antigen-1, EBNA1
Ligand NameKWG
EC.Number E.C.-.-.-.-
Resolution 1.35(Å)
Affinity (Kd/Ki/IC50)IC50=0.89uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Sci Transl Med Vol. 11: pp. eaau5612
Ligand Properties
Formula C19H13NO2
Molecular Weight 287.312
Exact Mass 287.095
No. of atoms 35
No. of bonds 37
Polar Surface Area 42.23
LOGP Value 4.95      (Computed with XLOGP3)
3.58      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P03211  
Entrez Gene IDNCBI Entrez Gene ID: 3783709  3783774  
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com