Browse entries in the PDBbind-CN Database

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Related entries of code: 6pvy
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2ndoRCSB PDB    PDBbind189aa, >2NDO_1|Chain... at 99%
4tkyRCSB PDB    PDBbind191aa, >4TKY_1|Chains... *
4wetRCSB PDB    PDBbind189aa, >4WET_1|Chains... at 99%
4weyRCSB PDB    PDBbind189aa, >4WEY_1|Chains... at 99%
4wf4RCSB PDB    PDBbind189aa, >4WF4_1|Chains... at 99%
4zijRCSB PDB    PDBbind188aa, >4ZIJ_1|Chains... at 99%
6pvzRCSB PDB    PDBbind189aa, >6PVZ_1|Chains... at 99%
6poqRCSB PDB    PDBbind189aa, >6POQ_1|Chains... at 99%
6poiRCSB PDB    PDBbind189aa, >6POI_1|Chains... at 99%
6pohRCSB PDB    PDBbind189aa, >6POH_1|Chains... at 99%
6pmlRCSB PDB    PDBbind189aa, >6PML_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID6pvy
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameThiol:disulfide interchange protein DsbA
Ligand NameOZG
EC.Number E.C.-.-.-.-
Resolution 1.74(Å)
Affinity (Kd/Ki/IC50)Kd=639uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Molecules Vol. 24: pp. 3756
Ligand Properties
Formula C17H14O5
Molecular Weight 298.290
Exact Mass 298.084
No. of atoms 36
No. of bonds 38
Polar Surface Area 68.9
LOGP Value 4.73      (Computed with XLOGP3)
3.86      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P0AEG4  
Entrez Gene IDNCBI Entrez Gene ID: 61755786  948353  
ASDInformation of known allosteric effects of PDB entries
 
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