Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 6pvz
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2ndoRCSB PDB    PDBbind189aa, >2NDO_1|Chain... at 99%
4tkyRCSB PDB    PDBbind191aa, >4TKY_1|Chains... *
4wetRCSB PDB    PDBbind189aa, >4WET_1|Chains... at 99%
4weyRCSB PDB    PDBbind189aa, >4WEY_1|Chains... at 99%
4wf4RCSB PDB    PDBbind189aa, >4WF4_1|Chains... at 99%
4zijRCSB PDB    PDBbind188aa, >4ZIJ_1|Chains... at 99%
6pvyRCSB PDB    PDBbind189aa, >6PVY_1|Chains... at 99%
6poqRCSB PDB    PDBbind189aa, >6POQ_1|Chains... at 99%
6poiRCSB PDB    PDBbind189aa, >6POI_1|Chains... at 99%
6pohRCSB PDB    PDBbind189aa, >6POH_1|Chains... at 99%
6pmlRCSB PDB    PDBbind189aa, >6PML_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID6pvz
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameThiol:disulfide interchange protein DsbA
Ligand NameOZM
EC.Number E.C.-.-.-.-
Resolution 1.99(Å)
Affinity (Kd/Ki/IC50)Kd=341uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Molecules Vol. 24: pp. 3756
Ligand Properties
Formula C17H14O3
Molecular Weight 266.291
Exact Mass 266.094
No. of atoms 34
No. of bonds 36
Polar Surface Area 50.44
LOGP Value 5.15      (Computed with XLOGP3)
3.65      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P0AEG4  
Entrez Gene IDNCBI Entrez Gene ID: 61755786  948353  
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com