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Related entries of code: 6qaf
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1wvaRCSB PDB    PDBbind322aa, >1WVA_1|Chains... at 100%
2aebRCSB PDB    PDBbind322aa, >2AEB_1|Chains... at 100%
2pllRCSB PDB    PDBbind322aa, >2PLL_1|Chains... at 100%
3e6kRCSB PDB    PDBbind322aa, >3E6K_1|Chains... at 99%
3e6vRCSB PDB    PDBbind322aa, >3E6V_1|Chains... at 99%
3f80RCSB PDB    PDBbind322aa, >3F80_1|Chains... at 100%
3kv2RCSB PDB    PDBbind322aa, >3KV2_1|Chains... at 100%
3lp4RCSB PDB    PDBbind322aa, >3LP4_1|Chains... at 100%
3lp7RCSB PDB    PDBbind322aa, >3LP7_1|Chains... at 100%
3mfvRCSB PDB    PDBbind322aa, >3MFV_1|Chains... at 100%
3mfwRCSB PDB    PDBbind322aa, >3MFW_1|Chains... at 100%
3mjlRCSB PDB    PDBbind322aa, >3MJL_1|Chains... at 100%
3sjtRCSB PDB    PDBbind322aa, >3SJT_1|Chains... at 100%
3skkRCSB PDB    PDBbind322aa, >3SKK_1|Chains... at 100%
4fciRCSB PDB    PDBbind322aa, >4FCI_1|Chains... at 100%
4fckRCSB PDB    PDBbind322aa, >4FCK_1|Chains... at 100%
4hwwRCSB PDB    PDBbind314aa, >4HWW_1|Chains... at 100%
4hxqRCSB PDB    PDBbind314aa, >4HXQ_1|Chains... at 100%
6q92RCSB PDB    PDBbind342aa, >6Q92_1|Chains... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID6qaf
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameArginase-1
Ligand NameXC3
EC.Number E.C.3.5.3.1
Resolution 1.61(Å)
Affinity (Kd/Ki/IC50)Kd=38nM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2020) Journal of Structural Biology: X Vol.4 : pp. 100014
Ligand Properties
Formula C11H28BN3O6
Molecular Weight 309.168
Exact Mass 309.207
No. of atoms 49
No. of bonds 49
Polar Surface Area 140.58
LOGP Value -4.10      (Computed with XLOGP3)
-5.03      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P05089  
Entrez Gene IDNCBI Entrez Gene ID: 383  
ASDInformation of known allosteric effects of PDB entries
 
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