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Related entries of code: 6r13
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5oh1RCSB PDB    PDBbind125aa, >5OH1_1|Chains... *
5oh2RCSB PDB    PDBbind125aa, >5OH2_1|Chains... at 100%
5oh3RCSB PDB    PDBbind125aa, >5OH3_1|Chains... at 100%
5oh4RCSB PDB    PDBbind125aa, >5OH4_1|Chains... at 100%
5oh7RCSB PDB    PDBbind125aa, >5OH7_1|Chains... at 100%
5oh9RCSB PDB    PDBbind125aa, >5OH9_1|Chains... at 100%
5ohaRCSB PDB    PDBbind125aa, >5OHA_1|Chains... at 100%
6r1xRCSB PDB    PDBbind125aa, >6R1X_1|Chains... at 100%
6r1wRCSB PDB    PDBbind125aa, >6R1W_1|Chains... at 100%
6r1kRCSB PDB    PDBbind125aa, >6R1K_1|Chains... at 100%
6r1dRCSB PDB    PDBbind125aa, >6R1D_1|Chains... at 100%
6r1cRCSB PDB    PDBbind125aa, >6R1C_1|Chains... at 100%
6r1aRCSB PDB    PDBbind125aa, >6R1A_1|Chains... at 100%
6r18RCSB PDB    PDBbind125aa, >6R18_1|Chains... at 100%
6r12RCSB PDB    PDBbind125aa, >6R12_1|Chains... at 100%
6r0sRCSB PDB    PDBbind125aa, >6R0S_1|Chains... at 100%
6r0uRCSB PDB    PDBbind125aa, >6R0U_1|Chains... at 100%
6r0vRCSB PDB    PDBbind125aa, >6R0V_1|Chains... at 100%
6r11RCSB PDB    PDBbind125aa, >6R11_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID6r13
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameCereblon isoform 4
Ligand NameJOK
EC.Number E.C.-.-.-.-
Resolution 1.65(Å)
Affinity (Kd/Ki/IC50)Ki=20uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) J.Med.Chem. Vol. 62: pp. 6615-6629
Ligand Properties
Formula C13H14N2O3
Molecular Weight 246.262
Exact Mass 246.100
No. of atoms 32
No. of bonds 33
Polar Surface Area 75.27
LOGP Value 0.30      (Computed with XLOGP3)
0.87      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A4TVL0  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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