Browse entries in the PDBbind-CN Database

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Related entries of code: 1rdj
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1rdiRCSB PDB    PDBbind113aa, >1RDI_1|Chains... *
1rdlRCSB PDB    PDBbind113aa, >1RDL_1|Chains... at 100%
1rdnRCSB PDB    PDBbind113aa, >1RDN_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
4c1yRCSB PDB    PDBbindMFB

Entry Information
PDB ID1rdj
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namemannose-binding protein-c
Ligand NameMFB
EC.Number E.C.-.-.-.-
Resolution 1.8(Å)
Affinity (Kd/Ki/IC50)Ki=21.7mM
Release Year1996
Protein/NA SequenceCheck fasta file
Primary Reference J.Biol.Chem. v271 pp. 663-74, 1996
Ligand Properties
Formula C6H12O5
Molecular Weight 164.156
Exact Mass 164.068
No. of atoms 23
No. of bonds 23
Polar Surface Area 90.15
LOGP Value -2.09      (Computed with XLOGP3)
-2.19      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P08661  
Entrez Gene IDNCBI Entrez Gene ID: 64668  
ASDInformation of known allosteric effects of PDB entries

 
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