Browse entries in the PDBbind-CN Database

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Related entries of code: 1rdl
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1rdiRCSB PDB    PDBbind113aa, >1RDI_1|Chains... *
1rdjRCSB PDB    PDBbind113aa, >1RDJ_1|Chains... at 100%
1rdnRCSB PDB    PDBbind113aa, >1RDN_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2bv4RCSB PDB    PDBbindMMA
2jdnRCSB PDB    PDBbindMMA
2jdyRCSB PDB    PDBbindMMA
Entry Information
PDB ID1rdl
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namemannose-binding protein-c
Ligand NameMMA
EC.Number E.C.-.-.-.-
Resolution 1.7(Å)
Affinity (Kd/Ki/IC50)Ki=5.7mM
Release Year1996
Protein/NA SequenceCheck fasta file
Primary Reference J.Biol.Chem. v271 pp. 663-74, 1996
Ligand Properties
Formula C6H12O6
Molecular Weight 180.156
Exact Mass 180.063
No. of atoms 24
No. of bonds 24
Polar Surface Area 110.38
LOGP Value -2.59      (Computed with XLOGP3)
-3.22      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P08661  
Entrez Gene IDNCBI Entrez Gene ID: 64668  
ASDInformation of known allosteric effects of PDB entries
 
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