Browse entries in the PDBbind-CN Database

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Related entries of code: 1rdn
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1rdiRCSB PDB    PDBbind113aa, >1RDI_1|Chains... *
1rdjRCSB PDB    PDBbind113aa, >1RDJ_1|Chains... at 100%
1rdlRCSB PDB    PDBbind113aa, >1RDL_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID1rdn
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namemannose-binding protein-c
Ligand NameMAG
EC.Number E.C.-.-.-.-
Resolution 1.8(Å)
Affinity (Kd/Ki/IC50)Ki=14.4mM
Release Year1996
Protein/NA SequenceCheck fasta file
Primary Reference J.Biol.Chem. v271 pp. 663-74, 1996
Ligand Properties
Formula C8H15NO6
Molecular Weight 221.208
Exact Mass 221.090
No. of atoms 30
No. of bonds 30
Polar Surface Area 119.25
LOGP Value -2.59      (Computed with XLOGP3)
-2.69      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P08661  
Entrez Gene IDNCBI Entrez Gene ID: 64668  
ASDInformation of known allosteric effects of PDB entries
 
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