Browse entries in the PDBbind-CN Database

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Related entries of code: 1vr1
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1ad8RCSB PDB    PDBbind259aa, >1AD8_2|Chain... at 100%
1awfRCSB PDB    PDBbind259aa, >1AWF_2|Chain... at 100%
1awhRCSB PDB    PDBbind259aa, >1AWH_2|Chains... at 100%
1bhxRCSB PDB    PDBbind105aa, >1BHX_3|Chain... at 100%
1c1uRCSB PDB    PDBbind259aa, >1C1U_2|Chain... at 100%
1c1vRCSB PDB    PDBbind11aa, >1C1V_3|Chain... at 90%
1c5nRCSB PDB    PDBbind259aa, >1C5N_2|Chain... at 100%
1c5oRCSB PDB    PDBbind259aa, >1C5O_2|Chain... at 100%
1d6wRCSB PDB    PDBbind287aa, >1D6W_1|Chain... at 100%
1d9iRCSB PDB    PDBbind288aa, >1D9I_1|Chain... at 100%
1dojRCSB PDB    PDBbind11aa, >1DOJ_2|Chain... at 90%
1dwcRCSB PDB    PDBbind11aa, >1DWC_3|Chain... at 90%
1dwdRCSB PDB    PDBbind11aa, >1DWD_3|Chain... at 90%
1eb1RCSB PDB    PDBbind27aa, >1EB1_3|Chain... at 100%
1g30RCSB PDB    PDBbind11aa, >1G30_3|Chain... at 90%
1g32RCSB PDB    PDBbind11aa, >1G32_3|Chain... at 90%
1g37RCSB PDB    PDBbind287aa, >1G37_1|Chain... at 100%
1ghvRCSB PDB    PDBbind11aa, >1GHV_3|Chain... at 90%
1ghwRCSB PDB    PDBbind11aa, >1GHW_3|Chain... at 90%
1ghyRCSB PDB    PDBbind257aa, >1GHY_2|Chain... at 100%
1gj4RCSB PDB    PDBbind11aa, >1GJ4_3|Chain... at 90%
1gj5RCSB PDB    PDBbind11aa, >1GJ5_3|Chain... at 90%
1hgtRCSB PDB    PDBbind259aa, >1HGT_2|Chain... at 100%
1jwtRCSB PDB    PDBbind305aa, >1JWT_1|Chain... *
1kttRCSB PDB    PDBbind259aa, >1KTT_2|Chain... at 100%
1mu6RCSB PDB    PDBbind11aa, >1MU6_3|Chain... at 90%
1mu8RCSB PDB    PDBbind11aa, >1MU8_3|Chain... at 90%
1mueRCSB PDB    PDBbind11aa, >1MUE_3|Chain... at 90%
1nm6RCSB PDB    PDBbind11aa, >1NM6_2|Chain... at 90%
1no9RCSB PDB    PDBbind11aa, >1NO9_3|Chain... at 90%
1ny2RCSB PDB    PDBbind259aa, >1NY2_2|Chain... at 100%
1o2gRCSB PDB    PDBbind259aa, >1O2G_2|Chain... at 100%
1o5gRCSB PDB    PDBbind259aa, >1O5G_2|Chain... at 100%
1qbvRCSB PDB    PDBbind11aa, >1QBV_3|Chain... at 90%
1qhrRCSB PDB    PDBbind259aa, >1QHR_2|Chain... at 100%
1qj1RCSB PDB    PDBbind259aa, >1QJ1_2|Chain... at 100%
1qj6RCSB PDB    PDBbind259aa, >1QJ6_2|Chain... at 100%
1qj7RCSB PDB    PDBbind259aa, >1QJ7_2|Chain... at 100%
1riwRCSB PDB    PDBbind11aa, >1RIW_4|Chain... at 90%
1sb1RCSB PDB    PDBbind258aa, >1SB1_2|Chain... at 100%
1sl3RCSB PDB    PDBbind11aa, >1SL3_2|Chain... at 90%
1t4vRCSB PDB    PDBbind11aa, >1T4V_3|Chain... at 90%
1tomRCSB PDB    PDBbind12aa, >1TOM_3|Chain... at 91%
1uvsRCSB PDB    PDBbind259aa, >1UVS_2|Chain... at 100%
1vzqRCSB PDB    PDBbind27aa, >1VZQ_3|Chain... at 100%
1w7gRCSB PDB    PDBbind12aa, >1W7G_2|Chain... at 91%
1wayRCSB PDB    PDBbind259aa, >1WAY_2|Chain... at 100%
1wbgRCSB PDB    PDBbind259aa, >1WBG_2|Chain... at 99%
1ypeRCSB PDB    PDBbind257aa, >1YPE_2|Chain... at 100%
1ypgRCSB PDB    PDBbind257aa, >1YPG_2|Chain... at 100%
1ypjRCSB PDB    PDBbind257aa, >1YPJ_2|Chain... at 100%
1z71RCSB PDB    PDBbind11aa, >1Z71_2|Chain... at 90%
1zgiRCSB PDB    PDBbind287aa, >1ZGI_1|Chain... at 100%
1zgvRCSB PDB    PDBbind287aa, >1ZGV_1|Chain... at 100%
2anmRCSB PDB    PDBbind36aa, >2ANM_2|Chain... at 100%
2bdyRCSB PDB    PDBbind289aa, >2BDY_1|Chain... at 100%
2bvsRCSB PDB    PDBbind36aa, >2BVS_3|Chain... at 100%
2bvxRCSB PDB    PDBbind36aa, >2BVX_3|Chain... at 100%
2bxtRCSB PDB    PDBbind36aa, >2BXT_3|Chain... at 100%
2bxuRCSB PDB    PDBbind36aa, >2BXU_3|Chain... at 100%
2gdeRCSB PDB    PDBbind259aa, >2GDE_2|Chain... at 100%
2h9tRCSB PDB    PDBbind259aa, >2H9T_2|Chain... at 100%
2jh0RCSB PDB    PDBbind259aa, >2JH0_2|Chain... at 100%
2jh5RCSB PDB    PDBbind259aa, >2JH5_2|Chain... at 100%
2jh6RCSB PDB    PDBbind36aa, >2JH6_1|Chain... at 100%
2pksRCSB PDB    PDBbind102aa, >2PKS_3|Chain... at 100%
2r2mRCSB PDB    PDBbind11aa, >2R2M_3|Chain... at 90%
2zc9RCSB PDB    PDBbind11aa, >2ZC9_3|Chain... at 90%
2zdaRCSB PDB    PDBbind11aa, >2ZDA_3|Chain... at 90%
2zfpRCSB PDB    PDBbind11aa, >2ZFP_3|Chain... at 90%
2zgxRCSB PDB    PDBbind259aa, >2ZGX_2|Chain... at 100%
2zo3RCSB PDB    PDBbind259aa, >2ZO3_2|Chain... at 100%
3bv9RCSB PDB    PDBbind259aa, >3BV9_2|Chain... at 99%
3c1kRCSB PDB    PDBbind11aa, >3C1K_2|Chain... at 90%
3da9RCSB PDB    PDBbind259aa, >3DA9_2|Chain... at 100%
3dhkRCSB PDB    PDBbind259aa, >3DHK_2|Chain... at 100%
3duxRCSB PDB    PDBbind11aa, >3DUX_3|Chain... at 90%
3egkRCSB PDB    PDBbind36aa, >3EGK_1|Chain... at 100%
3f68RCSB PDB    PDBbind11aa, >3F68_3|Chain... at 90%
3po1RCSB PDB    PDBbind147aa, >3PO1_2|Chain... at 100%
3utuRCSB PDB    PDBbind11aa, >3UTU_3|Chain... at 90%
4ax9RCSB PDB    PDBbind28aa, >4AX9_3|Chain... at 100%
4ayvRCSB PDB    PDBbind257aa, >4AYV_2|Chain... at 100%
4ayyRCSB PDB    PDBbind257aa, >4AYY_2|Chain... at 100%
4az2RCSB PDB    PDBbind11aa, >4AZ2_3|Chain... at 90%
4baoRCSB PDB    PDBbind259aa, >4BAO_2|Chain... at 100%
4e7rRCSB PDB    PDBbind259aa, >4E7R_2|Chains... at 100%
4hfpRCSB PDB    PDBbind259aa, >4HFP_2|Chains... at 99%
4loyRCSB PDB    PDBbind27aa, >4LOY_3|Chain... at 100%
4rn6RCSB PDB    PDBbind290aa, >4RN6_1|Chains... at 99%
7kmeRCSB PDB    PDBbind259aa, >7KME_2|Chain... at 100%
6gweRCSB PDB    PDBbind30aa, >6GWE_4|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1aqcRCSB PDB    PDBbind10-mer
1awiRCSB PDB    PDBbind10-mer
1azeRCSB PDB    PDBbind10-mer
1bjrRCSB PDB    PDBbind10-mer
1ckaRCSB PDB    PDBbind10-mer
1ckbRCSB PDB    PDBbind10-mer
1eb1RCSB PDB    PDBbind10-mer
1gbqRCSB PDB    PDBbind10-mer
1gvuRCSB PDB    PDBbind10-mer
1himRCSB PDB    PDBbind10-mer
1jd5RCSB PDB    PDBbind10-mer
1jd6RCSB PDB    PDBbind10-mer
1jmqRCSB PDB    PDBbind10-mer
1pywRCSB PDB    PDBbind10-mer
1vj6RCSB PDB    PDBbind10-mer
1y2aRCSB PDB    PDBbind10-mer
1ywiRCSB PDB    PDBbind10-mer
1yy6RCSB PDB    PDBbind10-mer
1zkkRCSB PDB    PDBbind10-mer
2a0tRCSB PDB    PDBbind10-mer
2aohRCSB PDB    PDBbind10-mer
2aojRCSB PDB    PDBbind10-mer
2axiRCSB PDB    PDBbind10-mer
2azmRCSB PDB    PDBbind10-mer
2b7fRCSB PDB    PDBbind10-mer
2c2lRCSB PDB    PDBbind10-mer
2gfaRCSB PDB    PDBbind10-mer
2h13RCSB PDB    PDBbind10-mer
2hrpRCSB PDB    PDBbind10-mer
2ig0RCSB PDB    PDBbind10-mer
2jmjRCSB PDB    PDBbind10-mer
2jqiRCSB PDB    PDBbind10-mer
2jqlRCSB PDB    PDBbind10-mer
2k2rRCSB PDB    PDBbind10-mer
2ke1RCSB PDB    PDBbind10-mer
2mnzRCSB PDB    PDBbind10-mer
2nxdRCSB PDB    PDBbind10-mer
2nxlRCSB PDB    PDBbind10-mer
2nxmRCSB PDB    PDBbind10-mer
2o9vRCSB PDB    PDBbind10-mer
2pehRCSB PDB    PDBbind10-mer
2pr9RCSB PDB    PDBbind10-mer
2puyRCSB PDB    PDBbind10-mer
2qqsRCSB PDB    PDBbind10-mer
2r3yRCSB PDB    PDBbind10-mer
2r7gRCSB PDB    PDBbind10-mer
2rr4RCSB PDB    PDBbind10-mer
2v7dRCSB PDB    PDBbind10-mer
2vnfRCSB PDB    PDBbind10-mer
2w6tRCSB PDB    PDBbind10-mer
2w77RCSB PDB    PDBbind10-mer
2wa8RCSB PDB    PDBbind10-mer
2wp1RCSB PDB    PDBbind10-mer
2z5oRCSB PDB    PDBbind10-mer
3al3RCSB PDB    PDBbind10-mer
3bh8RCSB PDB    PDBbind10-mer
3bh9RCSB PDB    PDBbind10-mer
3bhbRCSB PDB    PDBbind10-mer
3c94RCSB PDB    PDBbind10-mer
3d1eRCSB PDB    PDBbind10-mer
3diwRCSB PDB    PDBbind10-mer
3dnjRCSB PDB    PDBbind10-mer
3dpcRCSB PDB    PDBbind10-mer
3dvpRCSB PDB    PDBbind10-mer
3ebbRCSB PDB    PDBbind10-mer
3er5RCSB PDB    PDBbind10-mer
3f9wRCSB PDB    PDBbind10-mer
3f9yRCSB PDB    PDBbind10-mer
3fe7RCSB PDB    PDBbind10-mer
3feaRCSB PDB    PDBbind10-mer
3gbqRCSB PDB    PDBbind10-mer
3gdsRCSB PDB    PDBbind10-mer
3hg1RCSB PDB    PDBbind10-mer
3iqjRCSB PDB    PDBbind10-mer
3ivvRCSB PDB    PDBbind10-mer
3nkxRCSB PDB    PDBbind10-mer
3oq5RCSB PDB    PDBbind10-mer
3pujRCSB PDB    PDBbind10-mer
3pukRCSB PDB    PDBbind10-mer
3pxeRCSB PDB    PDBbind10-mer
3q8dRCSB PDB    PDBbind10-mer
3qztRCSB PDB    PDBbind10-mer
3rwiRCSB PDB    PDBbind10-mer
3shvRCSB PDB    PDBbind10-mer
3szmRCSB PDB    PDBbind10-mer
3tkzRCSB PDB    PDBbind10-mer
3tl0RCSB PDB    PDBbind10-mer
3uiiRCSB PDB    PDBbind10-mer
3uikRCSB PDB    PDBbind10-mer
3uvmRCSB PDB    PDBbind10-mer
3zmpRCSB PDB    PDBbind10-mer
3zmqRCSB PDB    PDBbind10-mer
4bg6RCSB PDB    PDBbind10-mer
4e34RCSB PDB    PDBbind10-mer
4e35RCSB PDB    PDBbind10-mer
4e3bRCSB PDB    PDBbind10-mer
4e81RCSB PDB    PDBbind10-mer
4e9dRCSB PDB    PDBbind10-mer
4er4RCSB PDB    PDBbind10-mer
4h39RCSB PDB    PDBbind10-mer
4h3bRCSB PDB    PDBbind10-mer
4hczRCSB PDB    PDBbind10-mer
4i2wRCSB PDB    PDBbind10-mer
4i2zRCSB PDB    PDBbind10-mer
4jfdRCSB PDB    PDBbind10-mer
4jfeRCSB PDB    PDBbind10-mer
4jffRCSB PDB    PDBbind10-mer
4jjqRCSB PDB    PDBbind10-mer
4joeRCSB PDB    PDBbind10-mer
4jofRCSB PDB    PDBbind10-mer
4jogRCSB PDB    PDBbind10-mer
4johRCSB PDB    PDBbind10-mer
4jojRCSB PDB    PDBbind10-mer
4jokRCSB PDB    PDBbind10-mer
4k6yRCSB PDB    PDBbind10-mer
4k72RCSB PDB    PDBbind10-mer
4k75RCSB PDB    PDBbind10-mer
4k76RCSB PDB    PDBbind10-mer
4k78RCSB PDB    PDBbind10-mer
4lnpRCSB PDB    PDBbind10-mer
4mdrRCSB PDB    PDBbind10-mer
4n84RCSB PDB    PDBbind10-mer
4nmoRCSB PDB    PDBbind10-mer
4nmpRCSB PDB    PDBbind10-mer
4nmqRCSB PDB    PDBbind10-mer
4nmrRCSB PDB    PDBbind10-mer
4nmsRCSB PDB    PDBbind10-mer
4nmtRCSB PDB    PDBbind10-mer
4nmvRCSB PDB    PDBbind10-mer
4o2cRCSB PDB    PDBbind10-mer
4oz1RCSB PDB    PDBbind10-mer
4p0aRCSB PDB    PDBbind10-mer
4p0bRCSB PDB    PDBbind10-mer
4qokRCSB PDB    PDBbind10-mer
4rqzRCSB PDB    PDBbind10-mer
4u90RCSB PDB    PDBbind10-mer
4v11RCSB PDB    PDBbind10-mer
4wj5RCSB PDB    PDBbind10-mer
4x1nRCSB PDB    PDBbind10-mer
4x1pRCSB PDB    PDBbind10-mer
4x1qRCSB PDB    PDBbind10-mer
4x1rRCSB PDB    PDBbind10-mer
4x1sRCSB PDB    PDBbind10-mer
4x34RCSB PDB    PDBbind10-mer
4x3sRCSB PDB    PDBbind10-mer
4x8nRCSB PDB    PDBbind10-mer
4xhvRCSB PDB    PDBbind10-mer
4z0uRCSB PDB    PDBbind10-mer
4z7iRCSB PDB    PDBbind10-mer
4zhlRCSB PDB    PDBbind10-mer
4zhmRCSB PDB    PDBbind10-mer
5ab0RCSB PDB    PDBbind10-mer
5aeiRCSB PDB    PDBbind10-mer
5azgRCSB PDB    PDBbind10-mer
5c0mRCSB PDB    PDBbind10-mer
5c11RCSB PDB    PDBbind10-mer
5c13RCSB PDB    PDBbind10-mer
5d6yRCSB PDB    PDBbind10-mer
5gp7RCSB PDB    PDBbind10-mer
5gs4RCSB PDB    PDBbind10-mer
5gtrRCSB PDB    PDBbind10-mer
5iawRCSB PDB    PDBbind10-mer
5j31RCSB PDB    PDBbind10-mer
5jziRCSB PDB    PDBbind10-mer
5myoRCSB PDB    PDBbind10-mer
5n1yRCSB PDB    PDBbind10-mer
5nx2RCSB PDB    PDBbind10-mer
5t6zRCSB PDB    PDBbind10-mer
5t70RCSB PDB    PDBbind10-mer
5t8rRCSB PDB    PDBbind10-mer
5vnbRCSB PDB    PDBbind10-mer
5w7iRCSB PDB    PDBbind10-mer
5w7jRCSB PDB    PDBbind10-mer
5wkfRCSB PDB    PDBbind10-mer
5wkhRCSB PDB    PDBbind10-mer
6ar2RCSB PDB    PDBbind10-mer
6buuRCSB PDB    PDBbind10-mer
6fkpRCSB PDB    PDBbind10-mer
6mimRCSB PDB    PDBbind10-mer
6qtxRCSB PDB    PDBbind10-mer
6pekRCSB PDB    PDBbind10-mer
6iiwRCSB PDB    PDBbind10-mer
6hzxRCSB PDB    PDBbind10-mer
6hoiRCSB PDB    PDBbind10-mer
6dkpRCSB PDB    PDBbind10-mer
6a8nRCSB PDB    PDBbind10-mer
5zysRCSB PDB    PDBbind10-mer
Entry Information
PDB ID1vr1
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namethrombin
Ligand Name10-mer
EC.Number E.C.3.4.21.5
Resolution 1.9(Å)
Affinity (Kd/Ki/IC50)Kd=128nM
Release Year1999
Protein/NA SequenceCheck fasta file
Primary Reference J.Mol.Biol. v293 pp. 613-27, 1999
Ligand Properties
Formula C59H83N10O22
Molecular Weight 1284.340
Exact Mass 1283.570
No. of atoms 174
No. of bonds 176
Polar Surface Area 524.78
LOGP Value 5.67      (Computed with XLOGP3)
0.83      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 10
No. of Hydrogen Bond Acceptors: 22
No. of Rotatable Bonds: 44
No. of Nitrogen and Oxygen Atoms: 32
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P28504  P00734  
Entrez Gene IDNCBI Entrez Gene ID: 2147  
ASDInformation of known allosteric effects of PDB entries
 
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