Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 2r5d
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2r5bRCSB PDB    PDBbind17aa, >2R5B_2|Chains... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1czqRCSB PDB    PDBbind17-mer
1ej4RCSB PDB    PDBbind17-mer
1f47RCSB PDB    PDBbind17-mer
1i5hRCSB PDB    PDBbind17-mer
1mxlRCSB PDB    PDBbind17-mer
1r2bRCSB PDB    PDBbind17-mer
1yboRCSB PDB    PDBbind17-mer
2br8RCSB PDB    PDBbind17-mer
2fysRCSB PDB    PDBbind17-mer
2jq9RCSB PDB    PDBbind17-mer
2krdRCSB PDB    PDBbind17-mer
2ll6RCSB PDB    PDBbind17-mer
2ll7RCSB PDB    PDBbind17-mer
2n3kRCSB PDB    PDBbind17-mer
2n9xRCSB PDB    PDBbind17-mer
2nm1RCSB PDB    PDBbind17-mer
2oddRCSB PDB    PDBbind17-mer
2r3cRCSB PDB    PDBbind17-mer
2r5bRCSB PDB    PDBbind17-mer
2uz6RCSB PDB    PDBbind17-mer
2w73RCSB PDB    PDBbind17-mer
2y6sRCSB PDB    PDBbind17-mer
3fdmRCSB PDB    PDBbind17-mer
6s07RCSB PDB    PDBbind17-mer
3ktrRCSB PDB    PDBbind17-mer
3o0eRCSB PDB    PDBbind17-mer
3qn7RCSB PDB    PDBbind17-mer
3t7gRCSB PDB    PDBbind17-mer
3u3fRCSB PDB    PDBbind17-mer
3uxgRCSB PDB    PDBbind17-mer
3uzdRCSB PDB    PDBbind17-mer
3v30RCSB PDB    PDBbind17-mer
3wp1RCSB PDB    PDBbind17-mer
4b60RCSB PDB    PDBbind17-mer
4blbRCSB PDB    PDBbind17-mer
4djsRCSB PDB    PDBbind17-mer
4esgRCSB PDB    PDBbind17-mer
4fmqRCSB PDB    PDBbind17-mer
4gy5RCSB PDB    PDBbind17-mer
4i31RCSB PDB    PDBbind17-mer
4i32RCSB PDB    PDBbind17-mer
4i33RCSB PDB    PDBbind17-mer
4j2cRCSB PDB    PDBbind17-mer
4kmdRCSB PDB    PDBbind17-mer
4lg6RCSB PDB    PDBbind17-mer
4nghRCSB PDB    PDBbind17-mer
4nhcRCSB PDB    PDBbind17-mer
4odnRCSB PDB    PDBbind17-mer
4qqiRCSB PDB    PDBbind17-mer
4tzqRCSB PDB    PDBbind17-mer
4u0cRCSB PDB    PDBbind17-mer
4u0dRCSB PDB    PDBbind17-mer
4uu5RCSB PDB    PDBbind17-mer
4wymRCSB PDB    PDBbind17-mer
4z88RCSB PDB    PDBbind17-mer
4z89RCSB PDB    PDBbind17-mer
4z8aRCSB PDB    PDBbind17-mer
5ajoRCSB PDB    PDBbind17-mer
5ajpRCSB PDB    PDBbind17-mer
5fosRCSB PDB    PDBbind17-mer
5hogRCSB PDB    PDBbind17-mer
5i22RCSB PDB    PDBbind17-mer
5ixtRCSB PDB    PDBbind17-mer
5j3vRCSB PDB    PDBbind17-mer
5twhRCSB PDB    PDBbind17-mer
5vlpRCSB PDB    PDBbind17-mer
5vzuRCSB PDB    PDBbind17-mer
5xglRCSB PDB    PDBbind17-mer
5xxfRCSB PDB    PDBbind17-mer
5ycoRCSB PDB    PDBbind17-mer
5znrRCSB PDB    PDBbind17-mer
6a6wRCSB PDB    PDBbind17-mer
6e49RCSB PDB    PDBbind17-mer
6f6dRCSB PDB    PDBbind17-mer
6rjpRCSB PDB    PDBbind17-mer
6qtmRCSB PDB    PDBbind17-mer
6q36RCSB PDB    PDBbind17-mer
6njzRCSB PDB    PDBbind17-mer
6kmjRCSB PDB    PDBbind17-mer
6datRCSB PDB    PDBbind17-mer
6da1RCSB PDB    PDBbind17-mer
5zk5RCSB PDB    PDBbind17-mer
5oy3RCSB PDB    PDBbind17-mer
6uyxRCSB PDB    PDBbind17-mer
6uyyRCSB PDB    PDBbind17-mer
6uyzRCSB PDB    PDBbind17-mer
Entry Information
PDB ID2r5d
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namegp41 N-peptide
Ligand Name17-mer
EC.Number E.C.-.-.-.-
Resolution 1.66(Å)
Affinity (Kd/Ki/IC50)Kd=0.07nM
Release Year2007
Protein/NA SequenceCheck fasta file
Primary Reference (2007) Proc.Natl.Acad.Sci.Usa Vol. 104: pp. 16828-16833
Ligand Properties
Formula C79H109N19O22S2
Molecular Weight 1740.950
Exact Mass 1739.740
No. of atoms 231
No. of bonds 237
Polar Surface Area 711.29
LOGP Value -3.10      (Computed with XLOGP3)
0.74      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 20
No. of Hydrogen Bond Acceptors: 22
No. of Rotatable Bonds: 36
No. of Nitrogen and Oxygen Atoms: 41
No. of Rings: 7
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACNo matched UniProt accession number (AC) found!
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com