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Related entries of code: 5vzu
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1czqRCSB PDB    PDBbind17-mer
1ej4RCSB PDB    PDBbind17-mer
1f47RCSB PDB    PDBbind17-mer
1i5hRCSB PDB    PDBbind17-mer
1mxlRCSB PDB    PDBbind17-mer
1r2bRCSB PDB    PDBbind17-mer
1yboRCSB PDB    PDBbind17-mer
2br8RCSB PDB    PDBbind17-mer
2fysRCSB PDB    PDBbind17-mer
2jq9RCSB PDB    PDBbind17-mer
2krdRCSB PDB    PDBbind17-mer
2ll6RCSB PDB    PDBbind17-mer
2ll7RCSB PDB    PDBbind17-mer
2n3kRCSB PDB    PDBbind17-mer
2n9xRCSB PDB    PDBbind17-mer
2nm1RCSB PDB    PDBbind17-mer
2oddRCSB PDB    PDBbind17-mer
2r3cRCSB PDB    PDBbind17-mer
2r5bRCSB PDB    PDBbind17-mer
2r5dRCSB PDB    PDBbind17-mer
2uz6RCSB PDB    PDBbind17-mer
2w73RCSB PDB    PDBbind17-mer
2y6sRCSB PDB    PDBbind17-mer
3fdmRCSB PDB    PDBbind17-mer
6s07RCSB PDB    PDBbind17-mer
3ktrRCSB PDB    PDBbind17-mer
3o0eRCSB PDB    PDBbind17-mer
3qn7RCSB PDB    PDBbind17-mer
3t7gRCSB PDB    PDBbind17-mer
3u3fRCSB PDB    PDBbind17-mer
3uxgRCSB PDB    PDBbind17-mer
3uzdRCSB PDB    PDBbind17-mer
3v30RCSB PDB    PDBbind17-mer
3wp1RCSB PDB    PDBbind17-mer
4b60RCSB PDB    PDBbind17-mer
4blbRCSB PDB    PDBbind17-mer
4djsRCSB PDB    PDBbind17-mer
4esgRCSB PDB    PDBbind17-mer
4fmqRCSB PDB    PDBbind17-mer
4gy5RCSB PDB    PDBbind17-mer
4i31RCSB PDB    PDBbind17-mer
4i32RCSB PDB    PDBbind17-mer
4i33RCSB PDB    PDBbind17-mer
4j2cRCSB PDB    PDBbind17-mer
4kmdRCSB PDB    PDBbind17-mer
4lg6RCSB PDB    PDBbind17-mer
4nghRCSB PDB    PDBbind17-mer
4nhcRCSB PDB    PDBbind17-mer
4odnRCSB PDB    PDBbind17-mer
4qqiRCSB PDB    PDBbind17-mer
4tzqRCSB PDB    PDBbind17-mer
4u0cRCSB PDB    PDBbind17-mer
4u0dRCSB PDB    PDBbind17-mer
4uu5RCSB PDB    PDBbind17-mer
4wymRCSB PDB    PDBbind17-mer
4z88RCSB PDB    PDBbind17-mer
4z89RCSB PDB    PDBbind17-mer
4z8aRCSB PDB    PDBbind17-mer
5ajoRCSB PDB    PDBbind17-mer
5ajpRCSB PDB    PDBbind17-mer
5fosRCSB PDB    PDBbind17-mer
5hogRCSB PDB    PDBbind17-mer
5i22RCSB PDB    PDBbind17-mer
5ixtRCSB PDB    PDBbind17-mer
5j3vRCSB PDB    PDBbind17-mer
5twhRCSB PDB    PDBbind17-mer
5vlpRCSB PDB    PDBbind17-mer
5xglRCSB PDB    PDBbind17-mer
5xxfRCSB PDB    PDBbind17-mer
5ycoRCSB PDB    PDBbind17-mer
5znrRCSB PDB    PDBbind17-mer
6a6wRCSB PDB    PDBbind17-mer
6e49RCSB PDB    PDBbind17-mer
6f6dRCSB PDB    PDBbind17-mer
6rjpRCSB PDB    PDBbind17-mer
6qtmRCSB PDB    PDBbind17-mer
6q36RCSB PDB    PDBbind17-mer
6njzRCSB PDB    PDBbind17-mer
6kmjRCSB PDB    PDBbind17-mer
6datRCSB PDB    PDBbind17-mer
6da1RCSB PDB    PDBbind17-mer
5zk5RCSB PDB    PDBbind17-mer
5oy3RCSB PDB    PDBbind17-mer
6uyxRCSB PDB    PDBbind17-mer
6uyyRCSB PDB    PDBbind17-mer
6uyzRCSB PDB    PDBbind17-mer
Entry Information
PDB ID5vzu
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameSkp1-FBXO31 core complex
Ligand Name17-mer
EC.Number E.C.-.-.-.-
Resolution 2.7(Å)
Affinity (Kd/Ki/IC50)Kd=2.7uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Proc. Natl. Acad. Sci. U.S.A. Vol. 115: pp. 319-324
Ligand Properties
Formula C43H74N12O17
Molecular Weight 1031.120
Exact Mass 1030.530
No. of atoms 146
No. of bonds 146
Polar Surface Area 484.85
LOGP Value 1.75      (Computed with XLOGP3)
-1.93      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 10
No. of Hydrogen Bond Acceptors: 17
No. of Rotatable Bonds: 37
No. of Nitrogen and Oxygen Atoms: 29
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P24385  Q5XUX0  P63208  
Entrez Gene IDNCBI Entrez Gene ID: 595  79791  6500  
ASDInformation of known allosteric effects of PDB entries
 
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