Browse entries in the PDBbind-CN Database

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Related entries of code: 2rkm
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1b05RCSB PDB    PDBbind517aa, >1B05_1|Chain... *
1b0hRCSB PDB    PDBbind517aa, >1B0H_1|Chain... at 100%
1b1hRCSB PDB    PDBbind517aa, >1B1H_1|Chain... at 100%
1b2hRCSB PDB    PDBbind517aa, >1B2H_1|Chain... at 100%
1b32RCSB PDB    PDBbind517aa, >1B32_1|Chain... at 100%
1b3fRCSB PDB    PDBbind517aa, >1B3F_1|Chain... at 100%
1b3gRCSB PDB    PDBbind517aa, >1B3G_1|Chain... at 100%
1b3hRCSB PDB    PDBbind517aa, >1B3H_1|Chain... at 100%
1b3lRCSB PDB    PDBbind517aa, >1B3L_1|Chains... at 100%
1b40RCSB PDB    PDBbind517aa, >1B40_1|Chain... at 100%
1b46RCSB PDB    PDBbind517aa, >1B46_1|Chain... at 100%
1b4hRCSB PDB    PDBbind517aa, >1B4H_1|Chain... at 100%
1b4zRCSB PDB    PDBbind517aa, >1B4Z_1|Chain... at 100%
1b51RCSB PDB    PDBbind517aa, >1B51_1|Chain... at 100%
1b52RCSB PDB    PDBbind517aa, >1B52_1|Chain... at 100%
1b58RCSB PDB    PDBbind517aa, >1B58_1|Chain... at 100%
1b5hRCSB PDB    PDBbind517aa, >1B5H_1|Chain... at 100%
1b5iRCSB PDB    PDBbind517aa, >1B5I_1|Chain... at 100%
1b5jRCSB PDB    PDBbind517aa, >1B5J_1|Chain... at 100%
1b6hRCSB PDB    PDBbind517aa, >1B6H_1|Chain... at 100%
1b7hRCSB PDB    PDBbind517aa, >1B7H_1|Chain... at 100%
1b9jRCSB PDB    PDBbind517aa, >1B9J_1|Chain... at 100%
1jetRCSB PDB    PDBbind517aa, >1JET_1|Chain... at 100%
1jeuRCSB PDB    PDBbind517aa, >1JEU_1|Chain... at 100%
1jevRCSB PDB    PDBbind517aa, >1JEV_1|Chain... at 100%
1qkaRCSB PDB    PDBbind517aa, >1QKA_1|Chain... at 100%
1qkbRCSB PDB    PDBbind517aa, >1QKB_1|Chain... at 100%
2olbRCSB PDB    PDBbind517aa, >2OLB_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
11gsRCSB PDB    PDBbind2-mer
1b2mRCSB PDB    PDBbind2-mer
1e55RCSB PDB    PDBbind2-mer
1eefRCSB PDB    PDBbind2-mer
1fh7RCSB PDB    PDBbind2-mer
1fh8RCSB PDB    PDBbind2-mer
1fh9RCSB PDB    PDBbind2-mer
1fhdRCSB PDB    PDBbind2-mer
1ocnRCSB PDB    PDBbind2-mer
1orwRCSB PDB    PDBbind2-mer
1y3nRCSB PDB    PDBbind2-mer
2igvRCSB PDB    PDBbind2-mer
2igwRCSB PDB    PDBbind2-mer
2r1xRCSB PDB    PDBbind2-mer
2r1yRCSB PDB    PDBbind2-mer
2r23RCSB PDB    PDBbind2-mer
2rokRCSB PDB    PDBbind2-mer
2tpiRCSB PDB    PDBbind2-mer
2vl1RCSB PDB    PDBbind2-mer
2wlyRCSB PDB    PDBbind2-mer
2wlzRCSB PDB    PDBbind2-mer
2wynRCSB PDB    PDBbind2-mer
3bbbRCSB PDB    PDBbind2-mer
3bpcRCSB PDB    PDBbind2-mer
3gssRCSB PDB    PDBbind2-mer
3ijyRCSB PDB    PDBbind2-mer
3ikcRCSB PDB    PDBbind2-mer
3ng4RCSB PDB    PDBbind2-mer
3oy8RCSB PDB    PDBbind2-mer
3qlbRCSB PDB    PDBbind2-mer
3rg2RCSB PDB    PDBbind2-mer
3vzgRCSB PDB    PDBbind2-mer
4cd4RCSB PDB    PDBbind2-mer
4cd5RCSB PDB    PDBbind2-mer
4cd6RCSB PDB    PDBbind2-mer
4cd8RCSB PDB    PDBbind2-mer
4gzxRCSB PDB    PDBbind2-mer
4jjfRCSB PDB    PDBbind2-mer
4jjgRCSB PDB    PDBbind2-mer
4k3lRCSB PDB    PDBbind2-mer
4lk7RCSB PDB    PDBbind2-mer
4lkkRCSB PDB    PDBbind2-mer
4nkuRCSB PDB    PDBbind2-mer
4oakRCSB PDB    PDBbind2-mer
4oelRCSB PDB    PDBbind2-mer
4oemRCSB PDB    PDBbind2-mer
4qflRCSB PDB    PDBbind2-mer
4qfnRCSB PDB    PDBbind2-mer
4qfoRCSB PDB    PDBbind2-mer
4qfpRCSB PDB    PDBbind2-mer
4v27RCSB PDB    PDBbind2-mer
4x6hRCSB PDB    PDBbind2-mer
4yw2RCSB PDB    PDBbind2-mer
5ggoRCSB PDB    PDBbind2-mer
5gubRCSB PDB    PDBbind2-mer
5gx6RCSB PDB    PDBbind2-mer
5gx7RCSB PDB    PDBbind2-mer
5j41RCSB PDB    PDBbind2-mer
5l7fRCSB PDB    PDBbind2-mer
5lneRCSB PDB    PDBbind2-mer
5lyrRCSB PDB    PDBbind2-mer
5m17RCSB PDB    PDBbind2-mer
5m1zRCSB PDB    PDBbind2-mer
5m5dRCSB PDB    PDBbind2-mer
5m77RCSB PDB    PDBbind2-mer
5o58RCSB PDB    PDBbind2-mer
5oxkRCSB PDB    PDBbind2-mer
5oxlRCSB PDB    PDBbind2-mer
5oxmRCSB PDB    PDBbind2-mer
5oxnRCSB PDB    PDBbind2-mer
5vkmRCSB PDB    PDBbind2-mer
5xs8RCSB PDB    PDBbind2-mer
6famRCSB PDB    PDBbind2-mer
6hmgRCSB PDB    PDBbind2-mer
6p7qRCSB PDB    PDBbind2-mer
6kdiRCSB PDB    PDBbind2-mer
6idgRCSB PDB    PDBbind2-mer
6a87RCSB PDB    PDBbind2-mer
6inzRCSB PDB    PDBbind2-mer
Entry Information
PDB ID2rkm
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Nameoligo-peptide binding protein
Ligand Name2-mer
EC.Number E.C.-.-.-.-
Resolution 1.8(Å)
Affinity (Kd/Ki/IC50)Ki=125uM
Release Year1997
Protein/NA SequenceCheck fasta file
Primary Reference Biochemistry v36 pp. 9747-58, 1997
Ligand Properties
Formula C12H29N4O3
Molecular Weight 277.384
Exact Mass 277.224
No. of atoms 48
No. of bonds 47
Polar Surface Area 149.32
LOGP Value -2.84      (Computed with XLOGP3)
-2.62      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 11
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P06202  
Entrez Gene IDNCBI Entrez Gene ID: 1253265  
ASDInformation of known allosteric effects of PDB entries
 
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