Browse entries in the PDBbind-CN Database

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Related entries of code: 2rok
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
11gsRCSB PDB    PDBbind2-mer
1b2mRCSB PDB    PDBbind2-mer
1e55RCSB PDB    PDBbind2-mer
1eefRCSB PDB    PDBbind2-mer
1fh7RCSB PDB    PDBbind2-mer
1fh8RCSB PDB    PDBbind2-mer
1fh9RCSB PDB    PDBbind2-mer
1fhdRCSB PDB    PDBbind2-mer
1ocnRCSB PDB    PDBbind2-mer
1orwRCSB PDB    PDBbind2-mer
1y3nRCSB PDB    PDBbind2-mer
2igvRCSB PDB    PDBbind2-mer
2igwRCSB PDB    PDBbind2-mer
2r1xRCSB PDB    PDBbind2-mer
2r1yRCSB PDB    PDBbind2-mer
2r23RCSB PDB    PDBbind2-mer
2rkmRCSB PDB    PDBbind2-mer
2tpiRCSB PDB    PDBbind2-mer
2vl1RCSB PDB    PDBbind2-mer
2wlyRCSB PDB    PDBbind2-mer
2wlzRCSB PDB    PDBbind2-mer
2wynRCSB PDB    PDBbind2-mer
3bbbRCSB PDB    PDBbind2-mer
3bpcRCSB PDB    PDBbind2-mer
3gssRCSB PDB    PDBbind2-mer
3ijyRCSB PDB    PDBbind2-mer
3ikcRCSB PDB    PDBbind2-mer
3ng4RCSB PDB    PDBbind2-mer
3oy8RCSB PDB    PDBbind2-mer
3qlbRCSB PDB    PDBbind2-mer
3rg2RCSB PDB    PDBbind2-mer
3vzgRCSB PDB    PDBbind2-mer
4cd4RCSB PDB    PDBbind2-mer
4cd5RCSB PDB    PDBbind2-mer
4cd6RCSB PDB    PDBbind2-mer
4cd8RCSB PDB    PDBbind2-mer
4gzxRCSB PDB    PDBbind2-mer
4jjfRCSB PDB    PDBbind2-mer
4jjgRCSB PDB    PDBbind2-mer
4k3lRCSB PDB    PDBbind2-mer
4lk7RCSB PDB    PDBbind2-mer
4lkkRCSB PDB    PDBbind2-mer
4nkuRCSB PDB    PDBbind2-mer
4oakRCSB PDB    PDBbind2-mer
4oelRCSB PDB    PDBbind2-mer
4oemRCSB PDB    PDBbind2-mer
4qflRCSB PDB    PDBbind2-mer
4qfnRCSB PDB    PDBbind2-mer
4qfoRCSB PDB    PDBbind2-mer
4qfpRCSB PDB    PDBbind2-mer
4v27RCSB PDB    PDBbind2-mer
4x6hRCSB PDB    PDBbind2-mer
4yw2RCSB PDB    PDBbind2-mer
5ggoRCSB PDB    PDBbind2-mer
5gubRCSB PDB    PDBbind2-mer
5gx6RCSB PDB    PDBbind2-mer
5gx7RCSB PDB    PDBbind2-mer
5j41RCSB PDB    PDBbind2-mer
5l7fRCSB PDB    PDBbind2-mer
5lneRCSB PDB    PDBbind2-mer
5lyrRCSB PDB    PDBbind2-mer
5m17RCSB PDB    PDBbind2-mer
5m1zRCSB PDB    PDBbind2-mer
5m5dRCSB PDB    PDBbind2-mer
5m77RCSB PDB    PDBbind2-mer
5o58RCSB PDB    PDBbind2-mer
5oxkRCSB PDB    PDBbind2-mer
5oxlRCSB PDB    PDBbind2-mer
5oxmRCSB PDB    PDBbind2-mer
5oxnRCSB PDB    PDBbind2-mer
5vkmRCSB PDB    PDBbind2-mer
5xs8RCSB PDB    PDBbind2-mer
6famRCSB PDB    PDBbind2-mer
6hmgRCSB PDB    PDBbind2-mer
6p7qRCSB PDB    PDBbind2-mer
6kdiRCSB PDB    PDBbind2-mer
6idgRCSB PDB    PDBbind2-mer
6a87RCSB PDB    PDBbind2-mer
6inzRCSB PDB    PDBbind2-mer
Entry Information
PDB ID2rok
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePoly(A)-specific ribonuclease(PARN)
Ligand Name2-mer
EC.Number E.C.3.1.13.4
Resolution NMR
Affinity (Kd/Ki/IC50)Kd=45uM
Release Year2009
Protein/NA SequenceCheck fasta file
Primary Reference (2008) Nucleic Acids Res. Vol. 36: pp. 4754-4767
Ligand Properties
Formula C21H36N10O18P3
Molecular Weight 809.488
Exact Mass 809.142
No. of atoms 88
No. of bonds 93
Polar Surface Area 462.28
LOGP Value -7.37      (Computed with XLOGP3)
-6.19      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 6
No. of Hydrogen Bond Acceptors: 13
No. of Rotatable Bonds: 16
No. of Nitrogen and Oxygen Atoms: 28
No. of Rings: 6
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q8VDG3  
Entrez Gene IDNCBI Entrez Gene ID: 74108  
ASDInformation of known allosteric effects of PDB entries
 
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