Browse entries in the PDBbind-CN Database

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Related entries of code: 3bpc
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1himRCSB PDB    PDBbind217aa, >1HIM_1|Chains... at 91%
2r1wRCSB PDB    PDBbind219aa, >2R1W_1|Chain... at 94%
2r1xRCSB PDB    PDBbind219aa, >2R1X_1|Chain... at 94%
2r1yRCSB PDB    PDBbind219aa, >2R1Y_1|Chain... at 94%
2r23RCSB PDB    PDBbind219aa, >2R23_1|Chain... at 94%
2r2bRCSB PDB    PDBbind219aa, >2R2B_1|Chain... at 94%
3hzkRCSB PDB    PDBbind219aa, >3HZK_1|Chain... at 94%
3hzmRCSB PDB    PDBbind219aa, >3HZM_1|Chain... at 94%
3hzvRCSB PDB    PDBbind219aa, >3HZV_1|Chain... at 94%
3hzyRCSB PDB    PDBbind219aa, >3HZY_1|Chain... at 94%
3i02RCSB PDB    PDBbind219aa, >3I02_1|Chains... at 94%
3ijhRCSB PDB    PDBbind219aa, >3IJH_1|Chains... at 94%
3ijyRCSB PDB    PDBbind218aa, >3IJY_1|Chains... at 94%
3ikcRCSB PDB    PDBbind218aa, >3IKC_1|Chains... at 94%
5kvdRCSB PDB    PDBbind220aa, >5KVD_2|Chain... at 91%
5kvfRCSB PDB    PDBbind220aa, >5KVF_2|Chain... at 91%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
11gsRCSB PDB    PDBbind2-mer
1b2mRCSB PDB    PDBbind2-mer
1e55RCSB PDB    PDBbind2-mer
1eefRCSB PDB    PDBbind2-mer
1fh7RCSB PDB    PDBbind2-mer
1fh8RCSB PDB    PDBbind2-mer
1fh9RCSB PDB    PDBbind2-mer
1fhdRCSB PDB    PDBbind2-mer
1ocnRCSB PDB    PDBbind2-mer
1orwRCSB PDB    PDBbind2-mer
1y3nRCSB PDB    PDBbind2-mer
2igvRCSB PDB    PDBbind2-mer
2igwRCSB PDB    PDBbind2-mer
2r1xRCSB PDB    PDBbind2-mer
2r1yRCSB PDB    PDBbind2-mer
2r23RCSB PDB    PDBbind2-mer
2rkmRCSB PDB    PDBbind2-mer
2rokRCSB PDB    PDBbind2-mer
2tpiRCSB PDB    PDBbind2-mer
2vl1RCSB PDB    PDBbind2-mer
2wlyRCSB PDB    PDBbind2-mer
2wlzRCSB PDB    PDBbind2-mer
2wynRCSB PDB    PDBbind2-mer
3bbbRCSB PDB    PDBbind2-mer
3gssRCSB PDB    PDBbind2-mer
3ijyRCSB PDB    PDBbind2-mer
3ikcRCSB PDB    PDBbind2-mer
3ng4RCSB PDB    PDBbind2-mer
3oy8RCSB PDB    PDBbind2-mer
3qlbRCSB PDB    PDBbind2-mer
3rg2RCSB PDB    PDBbind2-mer
3vzgRCSB PDB    PDBbind2-mer
4cd4RCSB PDB    PDBbind2-mer
4cd5RCSB PDB    PDBbind2-mer
4cd6RCSB PDB    PDBbind2-mer
4cd8RCSB PDB    PDBbind2-mer
4gzxRCSB PDB    PDBbind2-mer
4jjfRCSB PDB    PDBbind2-mer
4jjgRCSB PDB    PDBbind2-mer
4k3lRCSB PDB    PDBbind2-mer
4lk7RCSB PDB    PDBbind2-mer
4lkkRCSB PDB    PDBbind2-mer
4nkuRCSB PDB    PDBbind2-mer
4oakRCSB PDB    PDBbind2-mer
4oelRCSB PDB    PDBbind2-mer
4oemRCSB PDB    PDBbind2-mer
4qflRCSB PDB    PDBbind2-mer
4qfnRCSB PDB    PDBbind2-mer
4qfoRCSB PDB    PDBbind2-mer
4qfpRCSB PDB    PDBbind2-mer
4v27RCSB PDB    PDBbind2-mer
4x6hRCSB PDB    PDBbind2-mer
4yw2RCSB PDB    PDBbind2-mer
5ggoRCSB PDB    PDBbind2-mer
5gubRCSB PDB    PDBbind2-mer
5gx6RCSB PDB    PDBbind2-mer
5gx7RCSB PDB    PDBbind2-mer
5j41RCSB PDB    PDBbind2-mer
5l7fRCSB PDB    PDBbind2-mer
5lneRCSB PDB    PDBbind2-mer
5lyrRCSB PDB    PDBbind2-mer
5m17RCSB PDB    PDBbind2-mer
5m1zRCSB PDB    PDBbind2-mer
5m5dRCSB PDB    PDBbind2-mer
5m77RCSB PDB    PDBbind2-mer
5o58RCSB PDB    PDBbind2-mer
5oxkRCSB PDB    PDBbind2-mer
5oxlRCSB PDB    PDBbind2-mer
5oxmRCSB PDB    PDBbind2-mer
5oxnRCSB PDB    PDBbind2-mer
5vkmRCSB PDB    PDBbind2-mer
5xs8RCSB PDB    PDBbind2-mer
6famRCSB PDB    PDBbind2-mer
6hmgRCSB PDB    PDBbind2-mer
6p7qRCSB PDB    PDBbind2-mer
6kdiRCSB PDB    PDBbind2-mer
6idgRCSB PDB    PDBbind2-mer
6a87RCSB PDB    PDBbind2-mer
6inzRCSB PDB    PDBbind2-mer
Entry Information
PDB ID3bpc
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameFab, antibody fragment (IgG1k)
Ligand Name2-mer
EC.Number E.C.-.-.-.-
Resolution 1.85(Å)
Affinity (Kd/Ki/IC50)Kd=16uM
Release Year2009
Protein/NA SequenceCheck fasta file
Primary Reference (2008) J.Mol.Biol. Vol. 377: pp. 450-468
Ligand Properties
Formula C19H28O13
Molecular Weight 464.418
Exact Mass 464.153
No. of atoms 60
No. of bonds 61
Polar Surface Area 212.67
LOGP Value 0.00      (Computed with XLOGP3)
-2.32      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 9
No. of Rotatable Bonds: 13
No. of Nitrogen and Oxygen Atoms: 13
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P01837  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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