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Related entries of code: 2vpg
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2vpeRCSB PDB    PDBbind32aa, >2VPE_2|Chains... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1a3eRCSB PDB    PDBbind18-mer
1guwRCSB PDB    PDBbind18-mer
1l0aRCSB PDB    PDBbind18-mer
1n4mRCSB PDB    PDBbind18-mer
1o9kRCSB PDB    PDBbind18-mer
1ov3RCSB PDB    PDBbind18-mer
1pdqRCSB PDB    PDBbind18-mer
2df6RCSB PDB    PDBbind18-mer
2emtRCSB PDB    PDBbind18-mer
2h2dRCSB PDB    PDBbind18-mer
2kbrRCSB PDB    PDBbind18-mer
2knhRCSB PDB    PDBbind18-mer
2kzuRCSB PDB    PDBbind18-mer
2l8jRCSB PDB    PDBbind18-mer
2lp8RCSB PDB    PDBbind18-mer
2rvnRCSB PDB    PDBbind18-mer
2xs8RCSB PDB    PDBbind18-mer
2y9qRCSB PDB    PDBbind18-mer
3c3qRCSB PDB    PDBbind18-mer
3cfvRCSB PDB    PDBbind18-mer
3iswRCSB PDB    PDBbind18-mer
3iuxRCSB PDB    PDBbind18-mer
3kl8RCSB PDB    PDBbind18-mer
3l6xRCSB PDB    PDBbind18-mer
3pdhRCSB PDB    PDBbind18-mer
3rtxRCSB PDB    PDBbind18-mer
3uatRCSB PDB    PDBbind18-mer
3v31RCSB PDB    PDBbind18-mer
3v43RCSB PDB    PDBbind18-mer
4aomRCSB PDB    PDBbind18-mer
4ejfRCSB PDB    PDBbind18-mer
4glrRCSB PDB    PDBbind18-mer
4jk5RCSB PDB    PDBbind18-mer
4jk6RCSB PDB    PDBbind18-mer
4mzlRCSB PDB    PDBbind18-mer
4pn1RCSB PDB    PDBbind18-mer
4pz8RCSB PDB    PDBbind18-mer
4risRCSB PDB    PDBbind18-mer
4rqiRCSB PDB    PDBbind18-mer
4wrqRCSB PDB    PDBbind18-mer
4xh2RCSB PDB    PDBbind18-mer
5b4wRCSB PDB    PDBbind18-mer
5e2vRCSB PDB    PDBbind18-mer
5e2wRCSB PDB    PDBbind18-mer
5jekRCSB PDB    PDBbind18-mer
5mk1RCSB PDB    PDBbind18-mer
5mk3RCSB PDB    PDBbind18-mer
5odsRCSB PDB    PDBbind18-mer
5sveRCSB PDB    PDBbind18-mer
5t90RCSB PDB    PDBbind18-mer
5uwiRCSB PDB    PDBbind18-mer
5v3rRCSB PDB    PDBbind18-mer
5wa1RCSB PDB    PDBbind18-mer
5xyfRCSB PDB    PDBbind18-mer
5yc2RCSB PDB    PDBbind18-mer
5yv5RCSB PDB    PDBbind18-mer
6bhdRCSB PDB    PDBbind18-mer
6bheRCSB PDB    PDBbind18-mer
6bhhRCSB PDB    PDBbind18-mer
6h41RCSB PDB    PDBbind18-mer
6jjzRCSB PDB    PDBbind18-mer
6iqgRCSB PDB    PDBbind18-mer
6esaRCSB PDB    PDBbind18-mer
6erwRCSB PDB    PDBbind18-mer
6ervRCSB PDB    PDBbind18-mer
6eruRCSB PDB    PDBbind18-mer
6em7RCSB PDB    PDBbind18-mer
6em6RCSB PDB    PDBbind18-mer
6eh2RCSB PDB    PDBbind18-mer
6egwRCSB PDB    PDBbind18-mer
5y53RCSB PDB    PDBbind18-mer
5szcRCSB PDB    PDBbind18-mer
5szbRCSB PDB    PDBbind18-mer
5ousRCSB PDB    PDBbind18-mer
5ouaRCSB PDB    PDBbind18-mer
5ol3RCSB PDB    PDBbind18-mer
5ok3RCSB PDB    PDBbind18-mer
5o0eRCSB PDB    PDBbind18-mer
5nw8RCSB PDB    PDBbind18-mer
6emaRCSB PDB    PDBbind18-mer
6senRCSB PDB    PDBbind18-mer
6seoRCSB PDB    PDBbind18-mer
Entry Information
PDB ID2vpg
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamehPHD-HD1 complex
Ligand Name18-mer
EC.Number E.C.-.-.-.-
Resolution 1.6(Å)
Affinity (Kd/Ki/IC50)Kd=2.1uM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2008) Mol.Cell Vol. 30: pp. 507-518
Ligand Properties
Formula C35H69N12O11
Molecular Weight 833.996
Exact Mass 833.521
No. of atoms 127
No. of bonds 126
Polar Surface Area 370.76
LOGP Value -5.28      (Computed with XLOGP3)
-5.54      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 11
No. of Hydrogen Bond Acceptors: 11
No. of Rotatable Bonds: 34
No. of Nitrogen and Oxygen Atoms: 23
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9Y3Y4  O00512  P68431  
Entrez Gene IDNCBI Entrez Gene ID: 26108  607  8350  8351  8352  8353  8354  8355  8356  8357  8358  8968  
ASDInformation of known allosteric effects of PDB entries
 
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