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Related entries of code: 5mk3
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3c3rRCSB PDB    PDBbind13aa, >3C3R_2|Chain... at 100%
5v3rRCSB PDB    PDBbind18aa, >5V3R_2|Chain... at 100%
5wa1RCSB PDB    PDBbind18aa, >5WA1_2|Chain... at 94%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1a3eRCSB PDB    PDBbind18-mer
1guwRCSB PDB    PDBbind18-mer
1l0aRCSB PDB    PDBbind18-mer
1n4mRCSB PDB    PDBbind18-mer
1o9kRCSB PDB    PDBbind18-mer
1ov3RCSB PDB    PDBbind18-mer
1pdqRCSB PDB    PDBbind18-mer
2df6RCSB PDB    PDBbind18-mer
2emtRCSB PDB    PDBbind18-mer
2h2dRCSB PDB    PDBbind18-mer
2kbrRCSB PDB    PDBbind18-mer
2knhRCSB PDB    PDBbind18-mer
2kzuRCSB PDB    PDBbind18-mer
2l8jRCSB PDB    PDBbind18-mer
2lp8RCSB PDB    PDBbind18-mer
2rvnRCSB PDB    PDBbind18-mer
2vpgRCSB PDB    PDBbind18-mer
2xs8RCSB PDB    PDBbind18-mer
2y9qRCSB PDB    PDBbind18-mer
3c3qRCSB PDB    PDBbind18-mer
3cfvRCSB PDB    PDBbind18-mer
3iswRCSB PDB    PDBbind18-mer
3iuxRCSB PDB    PDBbind18-mer
3kl8RCSB PDB    PDBbind18-mer
3l6xRCSB PDB    PDBbind18-mer
3pdhRCSB PDB    PDBbind18-mer
3rtxRCSB PDB    PDBbind18-mer
3uatRCSB PDB    PDBbind18-mer
3v31RCSB PDB    PDBbind18-mer
3v43RCSB PDB    PDBbind18-mer
4aomRCSB PDB    PDBbind18-mer
4ejfRCSB PDB    PDBbind18-mer
4glrRCSB PDB    PDBbind18-mer
4jk5RCSB PDB    PDBbind18-mer
4jk6RCSB PDB    PDBbind18-mer
4mzlRCSB PDB    PDBbind18-mer
4pn1RCSB PDB    PDBbind18-mer
4pz8RCSB PDB    PDBbind18-mer
4risRCSB PDB    PDBbind18-mer
4rqiRCSB PDB    PDBbind18-mer
4wrqRCSB PDB    PDBbind18-mer
4xh2RCSB PDB    PDBbind18-mer
5b4wRCSB PDB    PDBbind18-mer
5e2vRCSB PDB    PDBbind18-mer
5e2wRCSB PDB    PDBbind18-mer
5jekRCSB PDB    PDBbind18-mer
5mk1RCSB PDB    PDBbind18-mer
5odsRCSB PDB    PDBbind18-mer
5sveRCSB PDB    PDBbind18-mer
5t90RCSB PDB    PDBbind18-mer
5uwiRCSB PDB    PDBbind18-mer
5v3rRCSB PDB    PDBbind18-mer
5wa1RCSB PDB    PDBbind18-mer
5xyfRCSB PDB    PDBbind18-mer
5yc2RCSB PDB    PDBbind18-mer
5yv5RCSB PDB    PDBbind18-mer
6bhdRCSB PDB    PDBbind18-mer
6bheRCSB PDB    PDBbind18-mer
6bhhRCSB PDB    PDBbind18-mer
6h41RCSB PDB    PDBbind18-mer
6jjzRCSB PDB    PDBbind18-mer
6iqgRCSB PDB    PDBbind18-mer
6esaRCSB PDB    PDBbind18-mer
6erwRCSB PDB    PDBbind18-mer
6ervRCSB PDB    PDBbind18-mer
6eruRCSB PDB    PDBbind18-mer
6em7RCSB PDB    PDBbind18-mer
6em6RCSB PDB    PDBbind18-mer
6eh2RCSB PDB    PDBbind18-mer
6egwRCSB PDB    PDBbind18-mer
5y53RCSB PDB    PDBbind18-mer
5szcRCSB PDB    PDBbind18-mer
5szbRCSB PDB    PDBbind18-mer
5ousRCSB PDB    PDBbind18-mer
5ouaRCSB PDB    PDBbind18-mer
5ol3RCSB PDB    PDBbind18-mer
5ok3RCSB PDB    PDBbind18-mer
5o0eRCSB PDB    PDBbind18-mer
5nw8RCSB PDB    PDBbind18-mer
6emaRCSB PDB    PDBbind18-mer
6senRCSB PDB    PDBbind18-mer
6seoRCSB PDB    PDBbind18-mer
Entry Information
PDB ID5mk3
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameTyrosine-protein phosphatase non-receptor type 23 (HD-PTPBro1)
Ligand Name18-mer
EC.Number E.C.3.1.3.48
Resolution 2(Å)
Affinity (Kd/Ki/IC50)Kd=89uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Structure Vol. 25: pp. 1011-1024.e4
Ligand Properties
Formula C55H88N14O18
Molecular Weight 1233.370
Exact Mass 1232.640
No. of atoms 175
No. of bonds 176
Polar Surface Area 537.29
LOGP Value -3.44      (Computed with XLOGP3)
-0.98      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 15
No. of Hydrogen Bond Acceptors: 18
No. of Rotatable Bonds: 47
No. of Nitrogen and Oxygen Atoms: 32
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q96CF2  Q9H3S7  
Entrez Gene IDNCBI Entrez Gene ID: 92421  25930  
ASDInformation of known allosteric effects of PDB entries
 
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