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Related entries of code: 2z78
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2e91RCSB PDB    PDBbind340aa, >2E91_1|Chains... *
2e92RCSB PDB    PDBbind340aa, >2E92_1|Chains... at 100%
2e93RCSB PDB    PDBbind340aa, >2E93_1|Chains... at 100%
2e94RCSB PDB    PDBbind340aa, >2E94_1|Chains... at 100%
2e95RCSB PDB    PDBbind340aa, >2E95_1|Chains... at 100%
2z4wRCSB PDB    PDBbind340aa, >2Z4W_1|Chains... at 100%
2z4yRCSB PDB    PDBbind340aa, >2Z4Y_1|Chains... at 100%
2z4zRCSB PDB    PDBbind340aa, >2Z4Z_1|Chains... at 100%
2z50RCSB PDB    PDBbind340aa, >2Z50_1|Chains... at 100%
2z52RCSB PDB    PDBbind340aa, >2Z52_1|Chains... at 100%
2z7hRCSB PDB    PDBbind340aa, >2Z7H_1|Chains... at 100%
2z7iRCSB PDB    PDBbind340aa, >2Z7I_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID2z78
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameGeranylgeranyl pyrophosphate synthetase
Ligand NameH86
EC.Number E.C.2.5.1.30
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)IC50=0.76uM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2008) J.Med.Chem. Vol. 51: pp. 5594-5607
Ligand Properties
Formula C23H37F2NO7P2
Molecular Weight 539.487
Exact Mass 539.201
No. of atoms 72
No. of bonds 73
Polar Surface Area 161.03
LOGP Value 3.03      (Computed with XLOGP3)
4.41      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 13
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q12051  
Entrez Gene IDNCBI Entrez Gene ID: 856036  
ASDInformation of known allosteric effects of PDB entries
 
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