Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 3cp9
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2oh4RCSB PDB    PDBbind316aa, >2OH4_1|Chain... at 99%
2p2hRCSB PDB    PDBbind314aa, >2P2H_1|Chain... at 97%
2p2iRCSB PDB    PDBbind314aa, >2P2I_1|Chains... at 97%
2qu5RCSB PDB    PDBbind314aa, >2QU5_1|Chain... at 97%
2qu6RCSB PDB    PDBbind314aa, >2QU6_1|Chains... at 97%
2rl5RCSB PDB    PDBbind314aa, >2RL5_1|Chain... at 97%
3b8qRCSB PDB    PDBbind314aa, >3B8Q_1|Chains... at 97%
3b8rRCSB PDB    PDBbind314aa, >3B8R_1|Chains... at 97%
3be2RCSB PDB    PDBbind314aa, >3BE2_1|Chain... at 97%
3c7qRCSB PDB    PDBbind316aa, >3C7Q_1|Chain... at 99%
3cjfRCSB PDB    PDBbind309aa, >3CJF_1|Chain... at 99%
3cpbRCSB PDB    PDBbind314aa, >3CPB_1|Chains... at 97%
3cpcRCSB PDB    PDBbind314aa, >3CPC_1|Chains... at 97%
3ewhRCSB PDB    PDBbind314aa, >3EWH_1|Chain... at 97%
3u6jRCSB PDB    PDBbind314aa, >3U6J_1|Chain... at 97%
3vntRCSB PDB    PDBbind318aa, >3VNT_1|Chain... at 99%
3vo3RCSB PDB    PDBbind318aa, >3VO3_1|Chain... at 99%
4ag8RCSB PDB    PDBbind316aa, >4AG8_1|Chain... at 100%
4agcRCSB PDB    PDBbind353aa, >4AGC_1|Chain... *
4agdRCSB PDB    PDBbind353aa, >4AGD_1|Chain... at 100%
4asdRCSB PDB    PDBbind353aa, >4ASD_1|Chain... at 100%
4aseRCSB PDB    PDBbind353aa, >4ASE_1|Chain... at 100%
5ew3RCSB PDB    PDBbind316aa, >5EW3_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID3cp9
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameV916T KDR
Ligand NameC19
EC.Number E.C.2.7.10.1
Resolution 2.5(Å)
Affinity (Kd/Ki/IC50)IC50=0.048uM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2008) J.Med.Chem. Vol. 51: pp. 3065-3068
Ligand Properties
Formula C24H23N5O
Molecular Weight 397.472
Exact Mass 397.190
No. of atoms 53
No. of bonds 57
Polar Surface Area 85.83
LOGP Value 3.66      (Computed with XLOGP3)
4.76      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P35968  
Entrez Gene IDNCBI Entrez Gene ID: 3791  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com