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Related entries of code: 4agc
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2oh4RCSB PDB    PDBbind316aa, >2OH4_1|Chain... at 99%
2p2hRCSB PDB    PDBbind314aa, >2P2H_1|Chain... at 97%
2p2iRCSB PDB    PDBbind314aa, >2P2I_1|Chains... at 97%
2qu5RCSB PDB    PDBbind314aa, >2QU5_1|Chain... at 97%
2qu6RCSB PDB    PDBbind314aa, >2QU6_1|Chains... at 97%
2rl5RCSB PDB    PDBbind314aa, >2RL5_1|Chain... at 97%
3b8qRCSB PDB    PDBbind314aa, >3B8Q_1|Chains... at 97%
3b8rRCSB PDB    PDBbind314aa, >3B8R_1|Chains... at 97%
3be2RCSB PDB    PDBbind314aa, >3BE2_1|Chain... at 97%
3c7qRCSB PDB    PDBbind316aa, >3C7Q_1|Chain... at 99%
3cjfRCSB PDB    PDBbind309aa, >3CJF_1|Chain... at 99%
3cp9RCSB PDB    PDBbind314aa, >3CP9_1|Chains... at 97%
3cpbRCSB PDB    PDBbind314aa, >3CPB_1|Chains... at 97%
3cpcRCSB PDB    PDBbind314aa, >3CPC_1|Chains... at 97%
3ewhRCSB PDB    PDBbind314aa, >3EWH_1|Chain... at 97%
3u6jRCSB PDB    PDBbind314aa, >3U6J_1|Chain... at 97%
3vntRCSB PDB    PDBbind318aa, >3VNT_1|Chain... at 99%
3vo3RCSB PDB    PDBbind318aa, >3VO3_1|Chain... at 99%
4ag8RCSB PDB    PDBbind316aa, >4AG8_1|Chain... at 100%
4agdRCSB PDB    PDBbind353aa, >4AGD_1|Chain... at 100%
4asdRCSB PDB    PDBbind353aa, >4ASD_1|Chain... at 100%
4aseRCSB PDB    PDBbind353aa, >4ASE_1|Chain... at 100%
5ew3RCSB PDB    PDBbind316aa, >5EW3_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
4ag8RCSB PDB    PDBbindAXI
4twpRCSB PDB    PDBbindAXI
4wa9RCSB PDB    PDBbindAXI
Entry Information
PDB ID4agc
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameVascular endothelial growth factor receptor 2, VEGFR2 juxtamembrane and kinase domain
Ligand NameAXI
EC.Number E.C.2.7.10.1
Resolution 2(Å)
Affinity (Kd/Ki/IC50)Ki=0.020nM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2012) Proc.Natl.Acad.Sci.USA Vol. 109: pp. 18281-18289
Ligand Properties
Formula C22H18N4OS
Molecular Weight 386.470
Exact Mass 386.120
No. of atoms 46
No. of bonds 49
Polar Surface Area 95.97
LOGP Value 4.17      (Computed with XLOGP3)
5.03      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P35968  
Entrez Gene IDNCBI Entrez Gene ID: 3791  
ASDInformation of known allosteric effects of PDB entries
 
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