Browse entries in the PDBbind-CN Database

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Related entries of code: 4dst
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1cluRCSB PDB    PDBbind166aa, >1CLU_1|Chain... at 92%
1d8eRCSB PDB    PDBbind11aa, >1D8E_3|Chain... at 100%
1he8RCSB PDB    PDBbind166aa, >1HE8_2|Chain... at 92%
1nvuRCSB PDB    PDBbind166aa, >1NVU_1|Chains... at 92%
1wq1RCSB PDB    PDBbind166aa, >1WQ1_1|Chain... at 92%
4dsuRCSB PDB    PDBbind189aa, >4DSU_1|Chain... at 100%
4epyRCSB PDB    PDBbind170aa, >4EPY_1|Chain... at 98%
4k81RCSB PDB    PDBbind171aa, >4K81_2|Chains... at 90%
4nyiRCSB PDB    PDBbind167aa, >4NYI_1|Chain... at 92%
4nyjRCSB PDB    PDBbind166aa, >4NYJ_2|Chain... at 92%
4nymRCSB PDB    PDBbind166aa, >4NYM_2|Chain... at 92%
5kykRCSB PDB    PDBbind169aa, >5KYK_1|Chains... at 98%
6b0vRCSB PDB    PDBbind170aa, >6B0V_1|Chains... at 97%
6b0yRCSB PDB    PDBbind170aa, >6B0Y_1|Chains... at 97%
6d55RCSB PDB    PDBbind167aa, >6D55_3|Chain... at 92%
6d56RCSB PDB    PDBbind167aa, >6D56_3|Chain... at 92%
6d59RCSB PDB    PDBbind167aa, >6D59_3|Chain... at 92%
6d5eRCSB PDB    PDBbind167aa, >6D5E_3|Chain... at 92%
6d5gRCSB PDB    PDBbind167aa, >6D5G_3|Chain... at 92%
6d5hRCSB PDB    PDBbind167aa, >6D5H_3|Chain... at 92%
6d5jRCSB PDB    PDBbind167aa, >6D5J_3|Chain... at 92%
6fa2RCSB PDB    PDBbind171aa, >6FA2_3|Chain... at 96%
6fa3RCSB PDB    PDBbind172aa, >6FA3_2|Chain... at 96%
6fa4RCSB PDB    PDBbind173aa, >6FA4_2|Chains... at 96%
6quwRCSB PDB    PDBbind170aa, >6QUW_1|Chains... at 99%
6quvRCSB PDB    PDBbind170aa, >6QUV_1|Chains... at 99%
6pgpRCSB PDB    PDBbind183aa, >6PGP_1|Chains... at 90%
6pgoRCSB PDB    PDBbind183aa, >6PGO_1|Chains... at 90%
6p8zRCSB PDB    PDBbind183aa, >6P8Z_1|Chains... at 90%
6p8yRCSB PDB    PDBbind183aa, >6P8Y_1|Chains... at 90%
6p8xRCSB PDB    PDBbind183aa, >6P8X_1|Chains... at 90%
6gj8RCSB PDB    PDBbind169aa, >6GJ8_1|Chain... at 99%
6gj7RCSB PDB    PDBbind170aa, >6GJ7_1|Chain... at 99%
6gj6RCSB PDB    PDBbind170aa, >6GJ6_1|Chain... at 99%
6gj5RCSB PDB    PDBbind170aa, >6GJ5_1|Chains... at 98%
6d5wRCSB PDB    PDBbind167aa, >6D5W_2|Chain... at 92%
6ccxRCSB PDB    PDBbind187aa, >6CCX_2|Chain... at 97%
6oimRCSB PDB    PDBbind183aa, >6OIM_1|Chain... at 90%
6cc9RCSB PDB    PDBbind187aa, >6CC9_2|Chain... at 97%
6v5lRCSB PDB    PDBbind169aa, >6V5L_1|Chain... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID4dst
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameGTPase KRas, isoform 2B
Ligand Name9LI
EC.Number E.C.3.6
Resolution 2.3(Å)
Affinity (Kd/Ki/IC50)Kd=1.1mM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2012) Proc.Natl.Acad.Sci.USA Vol. 109: pp. 5299-5304
Ligand Properties
Formula C11H13Cl2N2
Molecular Weight 244.140
Exact Mass 243.046
No. of atoms 28
No. of bonds 29
Polar Surface Area 43.43
LOGP Value 3.02      (Computed with XLOGP3)
2.57      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 0
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 2
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P01112  
Entrez Gene IDNCBI Entrez Gene ID: 3265  
ASDInformation of known allosteric effects of PDB entries
 
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