Browse entries in the PDBbind-CN Database

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Related entries of code: 5kyk
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1cluRCSB PDB    PDBbind166aa, >1CLU_1|Chain... at 92%
1d8eRCSB PDB    PDBbind11aa, >1D8E_3|Chain... at 100%
1he8RCSB PDB    PDBbind166aa, >1HE8_2|Chain... at 92%
1nvuRCSB PDB    PDBbind166aa, >1NVU_1|Chains... at 92%
1wq1RCSB PDB    PDBbind166aa, >1WQ1_1|Chain... at 92%
4dstRCSB PDB    PDBbind189aa, >4DST_1|Chain... *
4dsuRCSB PDB    PDBbind189aa, >4DSU_1|Chain... at 100%
4epyRCSB PDB    PDBbind170aa, >4EPY_1|Chain... at 98%
4k81RCSB PDB    PDBbind171aa, >4K81_2|Chains... at 90%
4nyiRCSB PDB    PDBbind167aa, >4NYI_1|Chain... at 92%
4nyjRCSB PDB    PDBbind166aa, >4NYJ_2|Chain... at 92%
4nymRCSB PDB    PDBbind166aa, >4NYM_2|Chain... at 92%
6b0vRCSB PDB    PDBbind170aa, >6B0V_1|Chains... at 97%
6b0yRCSB PDB    PDBbind170aa, >6B0Y_1|Chains... at 97%
6d55RCSB PDB    PDBbind167aa, >6D55_3|Chain... at 92%
6d56RCSB PDB    PDBbind167aa, >6D56_3|Chain... at 92%
6d59RCSB PDB    PDBbind167aa, >6D59_3|Chain... at 92%
6d5eRCSB PDB    PDBbind167aa, >6D5E_3|Chain... at 92%
6d5gRCSB PDB    PDBbind167aa, >6D5G_3|Chain... at 92%
6d5hRCSB PDB    PDBbind167aa, >6D5H_3|Chain... at 92%
6d5jRCSB PDB    PDBbind167aa, >6D5J_3|Chain... at 92%
6fa2RCSB PDB    PDBbind171aa, >6FA2_3|Chain... at 96%
6fa3RCSB PDB    PDBbind172aa, >6FA3_2|Chain... at 96%
6fa4RCSB PDB    PDBbind173aa, >6FA4_2|Chains... at 96%
6quwRCSB PDB    PDBbind170aa, >6QUW_1|Chains... at 99%
6quvRCSB PDB    PDBbind170aa, >6QUV_1|Chains... at 99%
6pgpRCSB PDB    PDBbind183aa, >6PGP_1|Chains... at 90%
6pgoRCSB PDB    PDBbind183aa, >6PGO_1|Chains... at 90%
6p8zRCSB PDB    PDBbind183aa, >6P8Z_1|Chains... at 90%
6p8yRCSB PDB    PDBbind183aa, >6P8Y_1|Chains... at 90%
6p8xRCSB PDB    PDBbind183aa, >6P8X_1|Chains... at 90%
6gj8RCSB PDB    PDBbind169aa, >6GJ8_1|Chain... at 99%
6gj7RCSB PDB    PDBbind170aa, >6GJ7_1|Chain... at 99%
6gj6RCSB PDB    PDBbind170aa, >6GJ6_1|Chain... at 99%
6gj5RCSB PDB    PDBbind170aa, >6GJ5_1|Chains... at 98%
6d5wRCSB PDB    PDBbind167aa, >6D5W_2|Chain... at 92%
6ccxRCSB PDB    PDBbind187aa, >6CCX_2|Chain... at 97%
6oimRCSB PDB    PDBbind183aa, >6OIM_1|Chain... at 90%
6cc9RCSB PDB    PDBbind187aa, >6CC9_2|Chain... at 97%
6v5lRCSB PDB    PDBbind169aa, >6V5L_1|Chain... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5kyk
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameGTPase KRas
Ligand Name6ZD
EC.Number E.C.-.-.-.-
Resolution 2.7(Å)
Affinity (Kd/Ki/IC50)Ki=1.6uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) ACS Med Chem Lett Vol. 8: pp. 61-66
Ligand Properties
Formula C15H26N7O10PS
Molecular Weight 527.447
Exact Mass 527.120
No. of atoms 60
No. of bonds 62
Polar Surface Area 287.46
LOGP Value -4.17      (Computed with XLOGP3)
-2.04      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 9
No. of Rotatable Bonds: 13
No. of Nitrogen and Oxygen Atoms: 17
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P01116  
Entrez Gene IDNCBI Entrez Gene ID: 3845  
ASDInformation of known allosteric effects of PDB entries
 
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