Browse entries in the PDBbind-CN Database

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Related entries of code: 4gm8
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2h13RCSB PDB    PDBbind317aa, >2H13_1|Chain... at 99%
2h6kRCSB PDB    PDBbind312aa, >2H6K_1|Chains... at 100%
2h6qRCSB PDB    PDBbind312aa, >2H6Q_1|Chains... at 100%
3pslRCSB PDB    PDBbind318aa, >3PSL_1|Chains... at 98%
3uvmRCSB PDB    PDBbind318aa, >3UVM_1|Chain... at 98%
4gm3RCSB PDB    PDBbind313aa, >4GM3_1|Chains... at 100%
4ql1RCSB PDB    PDBbind312aa, >4QL1_1|Chains... at 99%
4y7rRCSB PDB    PDBbind313aa, >4Y7R_1|Chain... at 100%
5d6jRCSB PDB    PDBbind74aa, >5D6J_2|Chain... at 100%
5m23RCSB PDB    PDBbind434aa, >5M23_1|Chain... *
5m25RCSB PDB    PDBbind434aa, >5M25_1|Chain... at 100%
5sxmRCSB PDB    PDBbind315aa, >5SXM_1|Chains... at 99%
5vfcRCSB PDB    PDBbind311aa, >5VFC_1|Chain... at 100%
6d9xRCSB PDB    PDBbind313aa, >6D9X_1|Chain... at 100%
6daiRCSB PDB    PDBbind313aa, >6DAI_1|Chain... at 100%
6dakRCSB PDB    PDBbind313aa, >6DAK_1|Chain... at 100%
6darRCSB PDB    PDBbind313aa, >6DAR_1|Chain... at 100%
6dasRCSB PDB    PDBbind313aa, >6DAS_1|Chains... at 100%
6pgeRCSB PDB    PDBbind305aa, >6PGE_1|Chain... at 99%
6pgcRCSB PDB    PDBbind305aa, >6PGC_1|Chain... at 99%
6pgbRCSB PDB    PDBbind305aa, >6PGB_1|Chain... at 99%
6pgaRCSB PDB    PDBbind305aa, >6PGA_1|Chain... at 99%
6pg9RCSB PDB    PDBbind314aa, >6PG9_1|Chains... at 100%
6pg8RCSB PDB    PDBbind314aa, >6PG8_1|Chains... at 100%
6pg7RCSB PDB    PDBbind305aa, >6PG7_1|Chain... at 99%
6pg6RCSB PDB    PDBbind314aa, >6PG6_1|Chains... at 100%
6pg5RCSB PDB    PDBbind305aa, >6PG5_1|Chain... at 99%
6pg4RCSB PDB    PDBbind305aa, >6PG4_1|Chain... at 99%
6pg3RCSB PDB    PDBbind314aa, >6PG3_1|Chains... at 100%
6e23RCSB PDB    PDBbind313aa, >6E23_1|Chains... at 100%
6e22RCSB PDB    PDBbind313aa, >6E22_1|Chains... at 100%
6e1zRCSB PDB    PDBbind313aa, >6E1Z_1|Chains... at 100%
6e1yRCSB PDB    PDBbind313aa, >6E1Y_1|Chains... at 100%
6dyaRCSB PDB    PDBbind305aa, >6DYA_1|Chain... at 100%
6dy7RCSB PDB    PDBbind304aa, >6DY7_1|Chain... at 100%
6u5mRCSB PDB    PDBbind304aa, >6U5M_1|Chains... at 100%
6u5yRCSB PDB    PDBbind304aa, >6U5Y_1|Chains... at 100%
6u6wRCSB PDB    PDBbind311aa, >6U6W_1|Chains... at 100%
6u80RCSB PDB    PDBbind311aa, >6U80_1|Chains... at 100%
6u8bRCSB PDB    PDBbind311aa, >6U8B_1|Chains... at 100%
6u8lRCSB PDB    PDBbind304aa, >6U8L_1|Chains... at 100%
6u8oRCSB PDB    PDBbind304aa, >6U8O_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1apvRCSB PDB    PDBbind5-mer
1apwRCSB PDB    PDBbind5-mer
1b6jRCSB PDB    PDBbind5-mer
1bhfRCSB PDB    PDBbind5-mer
1cpiRCSB PDB    PDBbind5-mer
1f1jRCSB PDB    PDBbind5-mer
1f9eRCSB PDB    PDBbind5-mer
1fchRCSB PDB    PDBbind5-mer
1fivRCSB PDB    PDBbind5-mer
1fyrRCSB PDB    PDBbind5-mer
1gnyRCSB PDB    PDBbind5-mer
1gu3RCSB PDB    PDBbind5-mer
1h5vRCSB PDB    PDBbind5-mer
1h9lRCSB PDB    PDBbind5-mer
1hefRCSB PDB    PDBbind5-mer
1iauRCSB PDB    PDBbind5-mer
1jq8RCSB PDB    PDBbind5-mer
1jq9RCSB PDB    PDBbind5-mer
1k9qRCSB PDB    PDBbind5-mer
1m7iRCSB PDB    PDBbind5-mer
1mf4RCSB PDB    PDBbind5-mer
1mhwRCSB PDB    PDBbind5-mer
1nh0RCSB PDB    PDBbind5-mer
1ny2RCSB PDB    PDBbind5-mer
1o9dRCSB PDB    PDBbind5-mer
1p02RCSB PDB    PDBbind5-mer
1p03RCSB PDB    PDBbind5-mer
1p04RCSB PDB    PDBbind5-mer
1p05RCSB PDB    PDBbind5-mer
1p06RCSB PDB    PDBbind5-mer
1p10RCSB PDB    PDBbind5-mer
1pauRCSB PDB    PDBbind5-mer
1qm5RCSB PDB    PDBbind5-mer
1qtnRCSB PDB    PDBbind5-mer
1shdRCSB PDB    PDBbind5-mer
1t37RCSB PDB    PDBbind5-mer
1tmbRCSB PDB    PDBbind5-mer
1w9uRCSB PDB    PDBbind5-mer
1w9vRCSB PDB    PDBbind5-mer
1wawRCSB PDB    PDBbind5-mer
1wb0RCSB PDB    PDBbind5-mer
1ym4RCSB PDB    PDBbind5-mer
1zm6RCSB PDB    PDBbind5-mer
2bcdRCSB PDB    PDBbind5-mer
2ce9RCSB PDB    PDBbind5-mer
2fguRCSB PDB    PDBbind5-mer
2fgvRCSB PDB    PDBbind5-mer
2h5dRCSB PDB    PDBbind5-mer
2h5iRCSB PDB    PDBbind5-mer
2h5jRCSB PDB    PDBbind5-mer
2j9aRCSB PDB    PDBbind5-mer
2k1qRCSB PDB    PDBbind5-mer
2l6jRCSB PDB    PDBbind5-mer
2lprRCSB PDB    PDBbind5-mer
2m0uRCSB PDB    PDBbind5-mer
2m0vRCSB PDB    PDBbind5-mer
2pcuRCSB PDB    PDBbind5-mer
2ql5RCSB PDB    PDBbind5-mer
2ql7RCSB PDB    PDBbind5-mer
2ql9RCSB PDB    PDBbind5-mer
2qlbRCSB PDB    PDBbind5-mer
2qlfRCSB PDB    PDBbind5-mer
2qljRCSB PDB    PDBbind5-mer
3atwRCSB PDB    PDBbind5-mer
3aycRCSB PDB    PDBbind5-mer
3c88RCSB PDB    PDBbind5-mer
3c89RCSB PDB    PDBbind5-mer
3c8aRCSB PDB    PDBbind5-mer
3c8bRCSB PDB    PDBbind5-mer
3chfRCSB PDB    PDBbind5-mer
3e7aRCSB PDB    PDBbind5-mer
3gjqRCSB PDB    PDBbind5-mer
3gjsRCSB PDB    PDBbind5-mer
3gjtRCSB PDB    PDBbind5-mer
3ibcRCSB PDB    PDBbind5-mer
3iqgRCSB PDB    PDBbind5-mer
3iqhRCSB PDB    PDBbind5-mer
3iqiRCSB PDB    PDBbind5-mer
3jzhRCSB PDB    PDBbind5-mer
3k05RCSB PDB    PDBbind5-mer
3k0hRCSB PDB    PDBbind5-mer
3k15RCSB PDB    PDBbind5-mer
3lprRCSB PDB    PDBbind5-mer
3mp1RCSB PDB    PDBbind5-mer
3ninRCSB PDB    PDBbind5-mer
3nzwRCSB PDB    PDBbind5-mer
3nzxRCSB PDB    PDBbind5-mer
3ov1RCSB PDB    PDBbind5-mer
3oveRCSB PDB    PDBbind5-mer
3oypRCSB PDB    PDBbind5-mer
3qw5RCSB PDB    PDBbind5-mer
3qw6RCSB PDB    PDBbind5-mer
3qw7RCSB PDB    PDBbind5-mer
3qw8RCSB PDB    PDBbind5-mer
3r7bRCSB PDB    PDBbind5-mer
3r7nRCSB PDB    PDBbind5-mer
3s8lRCSB PDB    PDBbind5-mer
3s8nRCSB PDB    PDBbind5-mer
3s8oRCSB PDB    PDBbind5-mer
3sxuRCSB PDB    PDBbind5-mer
3t6bRCSB PDB    PDBbind5-mer
3t6jRCSB PDB    PDBbind5-mer
3th0RCSB PDB    PDBbind5-mer
3u1iRCSB PDB    PDBbind5-mer
3u4wRCSB PDB    PDBbind5-mer
3vb4RCSB PDB    PDBbind5-mer
3vb5RCSB PDB    PDBbind5-mer
3vb7RCSB PDB    PDBbind5-mer
3wqvRCSB PDB    PDBbind5-mer
4czsRCSB PDB    PDBbind5-mer
4d8iRCSB PDB    PDBbind5-mer
4dktRCSB PDB    PDBbind5-mer
4estRCSB PDB    PDBbind5-mer
4gm3RCSB PDB    PDBbind5-mer
4i9cRCSB PDB    PDBbind5-mer
4j78RCSB PDB    PDBbind5-mer
4j81RCSB PDB    PDBbind5-mer
4j82RCSB PDB    PDBbind5-mer
4j84RCSB PDB    PDBbind5-mer
4k3mRCSB PDB    PDBbind5-mer
4kvmRCSB PDB    PDBbind5-mer
4l6tRCSB PDB    PDBbind5-mer
4lteRCSB PDB    PDBbind5-mer
4omcRCSB PDB    PDBbind5-mer
4omdRCSB PDB    PDBbind5-mer
4pryRCSB PDB    PDBbind5-mer
4ps0RCSB PDB    PDBbind5-mer
4ps1RCSB PDB    PDBbind5-mer
4q6fRCSB PDB    PDBbind5-mer
4rcpRCSB PDB    PDBbind5-mer
4rspRCSB PDB    PDBbind5-mer
4rydRCSB PDB    PDBbind5-mer
4sgaRCSB PDB    PDBbind5-mer
4whhRCSB PDB    PDBbind5-mer
4whlRCSB PDB    PDBbind5-mer
4wvsRCSB PDB    PDBbind5-mer
4wvuRCSB PDB    PDBbind5-mer
4x13RCSB PDB    PDBbind5-mer
4x9wRCSB PDB    PDBbind5-mer
4yecRCSB PDB    PDBbind5-mer
4yv8RCSB PDB    PDBbind5-mer
4z5wRCSB PDB    PDBbind5-mer
4z7qRCSB PDB    PDBbind5-mer
4zroRCSB PDB    PDBbind5-mer
5axiRCSB PDB    PDBbind5-mer
5bmmRCSB PDB    PDBbind5-mer
5btrRCSB PDB    PDBbind5-mer
5e3aRCSB PDB    PDBbind5-mer
5e8fRCSB PDB    PDBbind5-mer
5eldRCSB PDB    PDBbind5-mer
5eleRCSB PDB    PDBbind5-mer
5elfRCSB PDB    PDBbind5-mer
5f5bRCSB PDB    PDBbind5-mer
5h7hRCSB PDB    PDBbind5-mer
5icvRCSB PDB    PDBbind5-mer
5jr6RCSB PDB    PDBbind5-mer
5lprRCSB PDB    PDBbind5-mer
5n99RCSB PDB    PDBbind5-mer
5nwiRCSB PDB    PDBbind5-mer
5nwkRCSB PDB    PDBbind5-mer
5ttwRCSB PDB    PDBbind5-mer
5x54RCSB PDB    PDBbind5-mer
5yc1RCSB PDB    PDBbind5-mer
5zobRCSB PDB    PDBbind5-mer
6ax4RCSB PDB    PDBbind5-mer
6b5qRCSB PDB    PDBbind5-mer
6eqvRCSB PDB    PDBbind5-mer
6eqwRCSB PDB    PDBbind5-mer
6lprRCSB PDB    PDBbind5-mer
6mubRCSB PDB    PDBbind5-mer
7lprRCSB PDB    PDBbind5-mer
8lprRCSB PDB    PDBbind5-mer
9lprRCSB PDB    PDBbind5-mer
6hzbRCSB PDB    PDBbind5-mer
6hzaRCSB PDB    PDBbind5-mer
6hv2RCSB PDB    PDBbind5-mer
6dn6RCSB PDB    PDBbind5-mer
Entry Information
PDB ID4gm8
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameWD repeat-containing protein 5
Ligand Name5-mer
EC.Number E.C.-.-.-.-
Resolution 2.6(Å)
Affinity (Kd/Ki/IC50)Ki<1nM
Release Year2013
Protein/NA SequenceCheck fasta file
Primary Reference (2013) J.Am.Chem.Soc. Vol. 135: pp. 669-682
Ligand Properties
Formula C35H50F2N7O4
Molecular Weight 670.813
Exact Mass 670.389
No. of atoms 98
No. of bonds 100
Polar Surface Area 182.41
LOGP Value 6.02      (Computed with XLOGP3)
4.51      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 20
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P61964  
Entrez Gene IDNCBI Entrez Gene ID: 11091  
ASDInformation of known allosteric effects of PDB entries
 
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