Browse entries in the PDBbind-CN Database

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Related entries of code: 6pgc
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2h13RCSB PDB    PDBbind317aa, >2H13_1|Chain... at 99%
2h6kRCSB PDB    PDBbind312aa, >2H6K_1|Chains... at 100%
2h6qRCSB PDB    PDBbind312aa, >2H6Q_1|Chains... at 100%
3pslRCSB PDB    PDBbind318aa, >3PSL_1|Chains... at 98%
3uvmRCSB PDB    PDBbind318aa, >3UVM_1|Chain... at 98%
4gm3RCSB PDB    PDBbind313aa, >4GM3_1|Chains... at 100%
4gm8RCSB PDB    PDBbind313aa, >4GM8_1|Chains... at 100%
4ql1RCSB PDB    PDBbind312aa, >4QL1_1|Chains... at 99%
4y7rRCSB PDB    PDBbind313aa, >4Y7R_1|Chain... at 100%
5d6jRCSB PDB    PDBbind74aa, >5D6J_2|Chain... at 100%
5m23RCSB PDB    PDBbind434aa, >5M23_1|Chain... *
5m25RCSB PDB    PDBbind434aa, >5M25_1|Chain... at 100%
5sxmRCSB PDB    PDBbind315aa, >5SXM_1|Chains... at 99%
5vfcRCSB PDB    PDBbind311aa, >5VFC_1|Chain... at 100%
6d9xRCSB PDB    PDBbind313aa, >6D9X_1|Chain... at 100%
6daiRCSB PDB    PDBbind313aa, >6DAI_1|Chain... at 100%
6dakRCSB PDB    PDBbind313aa, >6DAK_1|Chain... at 100%
6darRCSB PDB    PDBbind313aa, >6DAR_1|Chain... at 100%
6dasRCSB PDB    PDBbind313aa, >6DAS_1|Chains... at 100%
6pgeRCSB PDB    PDBbind305aa, >6PGE_1|Chain... at 99%
6pgbRCSB PDB    PDBbind305aa, >6PGB_1|Chain... at 99%
6pgaRCSB PDB    PDBbind305aa, >6PGA_1|Chain... at 99%
6pg9RCSB PDB    PDBbind314aa, >6PG9_1|Chains... at 100%
6pg8RCSB PDB    PDBbind314aa, >6PG8_1|Chains... at 100%
6pg7RCSB PDB    PDBbind305aa, >6PG7_1|Chain... at 99%
6pg6RCSB PDB    PDBbind314aa, >6PG6_1|Chains... at 100%
6pg5RCSB PDB    PDBbind305aa, >6PG5_1|Chain... at 99%
6pg4RCSB PDB    PDBbind305aa, >6PG4_1|Chain... at 99%
6pg3RCSB PDB    PDBbind314aa, >6PG3_1|Chains... at 100%
6e23RCSB PDB    PDBbind313aa, >6E23_1|Chains... at 100%
6e22RCSB PDB    PDBbind313aa, >6E22_1|Chains... at 100%
6e1zRCSB PDB    PDBbind313aa, >6E1Z_1|Chains... at 100%
6e1yRCSB PDB    PDBbind313aa, >6E1Y_1|Chains... at 100%
6dyaRCSB PDB    PDBbind305aa, >6DYA_1|Chain... at 100%
6dy7RCSB PDB    PDBbind304aa, >6DY7_1|Chain... at 100%
6u5mRCSB PDB    PDBbind304aa, >6U5M_1|Chains... at 100%
6u5yRCSB PDB    PDBbind304aa, >6U5Y_1|Chains... at 100%
6u6wRCSB PDB    PDBbind311aa, >6U6W_1|Chains... at 100%
6u80RCSB PDB    PDBbind311aa, >6U80_1|Chains... at 100%
6u8bRCSB PDB    PDBbind311aa, >6U8B_1|Chains... at 100%
6u8lRCSB PDB    PDBbind304aa, >6U8L_1|Chains... at 100%
6u8oRCSB PDB    PDBbind304aa, >6U8O_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
6uvpRCSB PDB    PDBbindOJJ
Entry Information
PDB ID6pgc
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameWD repeat-containing protein 5, WDR5-delta23
Ligand NameOJJ
EC.Number E.C.-.-.-.-
Resolution 1.81(Å)
Affinity (Kd/Ki/IC50)Kd=4.5uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Struct Dyn. Vol. 6: pp. 064701-064701
Ligand Properties
Formula C17H23N3O3
Molecular Weight 317.383
Exact Mass 317.174
No. of atoms 46
No. of bonds 47
Polar Surface Area 78.45
LOGP Value 1.62      (Computed with XLOGP3)
2.49      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 11
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P61964  
Entrez Gene IDNCBI Entrez Gene ID: 11091  
ASDInformation of known allosteric effects of PDB entries
 
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