Browse entries in the PDBbind-CN Database

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Related entries of code: 5m25
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2h13RCSB PDB    PDBbind317aa, >2H13_1|Chain... at 99%
2h6kRCSB PDB    PDBbind312aa, >2H6K_1|Chains... at 100%
2h6qRCSB PDB    PDBbind312aa, >2H6Q_1|Chains... at 100%
3pslRCSB PDB    PDBbind318aa, >3PSL_1|Chains... at 98%
3uvmRCSB PDB    PDBbind318aa, >3UVM_1|Chain... at 98%
4gm3RCSB PDB    PDBbind313aa, >4GM3_1|Chains... at 100%
4gm8RCSB PDB    PDBbind313aa, >4GM8_1|Chains... at 100%
4ql1RCSB PDB    PDBbind312aa, >4QL1_1|Chains... at 99%
4y7rRCSB PDB    PDBbind313aa, >4Y7R_1|Chain... at 100%
5d6jRCSB PDB    PDBbind74aa, >5D6J_2|Chain... at 100%
5m23RCSB PDB    PDBbind434aa, >5M23_1|Chain... *
5sxmRCSB PDB    PDBbind315aa, >5SXM_1|Chains... at 99%
5vfcRCSB PDB    PDBbind311aa, >5VFC_1|Chain... at 100%
6d9xRCSB PDB    PDBbind313aa, >6D9X_1|Chain... at 100%
6daiRCSB PDB    PDBbind313aa, >6DAI_1|Chain... at 100%
6dakRCSB PDB    PDBbind313aa, >6DAK_1|Chain... at 100%
6darRCSB PDB    PDBbind313aa, >6DAR_1|Chain... at 100%
6dasRCSB PDB    PDBbind313aa, >6DAS_1|Chains... at 100%
6pgeRCSB PDB    PDBbind305aa, >6PGE_1|Chain... at 99%
6pgcRCSB PDB    PDBbind305aa, >6PGC_1|Chain... at 99%
6pgbRCSB PDB    PDBbind305aa, >6PGB_1|Chain... at 99%
6pgaRCSB PDB    PDBbind305aa, >6PGA_1|Chain... at 99%
6pg9RCSB PDB    PDBbind314aa, >6PG9_1|Chains... at 100%
6pg8RCSB PDB    PDBbind314aa, >6PG8_1|Chains... at 100%
6pg7RCSB PDB    PDBbind305aa, >6PG7_1|Chain... at 99%
6pg6RCSB PDB    PDBbind314aa, >6PG6_1|Chains... at 100%
6pg5RCSB PDB    PDBbind305aa, >6PG5_1|Chain... at 99%
6pg4RCSB PDB    PDBbind305aa, >6PG4_1|Chain... at 99%
6pg3RCSB PDB    PDBbind314aa, >6PG3_1|Chains... at 100%
6e23RCSB PDB    PDBbind313aa, >6E23_1|Chains... at 100%
6e22RCSB PDB    PDBbind313aa, >6E22_1|Chains... at 100%
6e1zRCSB PDB    PDBbind313aa, >6E1Z_1|Chains... at 100%
6e1yRCSB PDB    PDBbind313aa, >6E1Y_1|Chains... at 100%
6dyaRCSB PDB    PDBbind305aa, >6DYA_1|Chain... at 100%
6dy7RCSB PDB    PDBbind304aa, >6DY7_1|Chain... at 100%
6u5mRCSB PDB    PDBbind304aa, >6U5M_1|Chains... at 100%
6u5yRCSB PDB    PDBbind304aa, >6U5Y_1|Chains... at 100%
6u6wRCSB PDB    PDBbind311aa, >6U6W_1|Chains... at 100%
6u80RCSB PDB    PDBbind311aa, >6U80_1|Chains... at 100%
6u8bRCSB PDB    PDBbind311aa, >6U8B_1|Chains... at 100%
6u8lRCSB PDB    PDBbind304aa, >6U8L_1|Chains... at 100%
6u8oRCSB PDB    PDBbind304aa, >6U8O_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5m25
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameWD repeat-containing protein 5
Ligand Name7DU
EC.Number E.C.-.-.-.-
Resolution 2.43(Å)
Affinity (Kd/Ki/IC50)Ki=6.50nM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Chem Sci Vol. 8: pp. 4612-4618
Ligand Properties
Formula C29H46N10O6
Molecular Weight 630.739
Exact Mass 630.360
No. of atoms 91
No. of bonds 92
Polar Surface Area 274.57
LOGP Value 0.59      (Computed with XLOGP3)
-1.42      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 9
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 24
No. of Nitrogen and Oxygen Atoms: 16
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P61964  
Entrez Gene IDNCBI Entrez Gene ID: 11091  
ASDInformation of known allosteric effects of PDB entries
 
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