Browse entries in the PDBbind-CN Database

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Related entries of code: 4x61
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4x60RCSB PDB    PDBbind350aa, >4X60_2|Chain... *
4x63RCSB PDB    PDBbind350aa, >4X63_2|Chain... at 100%
5emjRCSB PDB    PDBbind350aa, >5EMJ_2|Chain... at 100%
5emkRCSB PDB    PDBbind350aa, >5EMK_2|Chain... at 100%
5emlRCSB PDB    PDBbind350aa, >5EML_2|Chain... at 100%
5emmRCSB PDB    PDBbind350aa, >5EMM_2|Chain... at 100%
6ckcRCSB PDB    PDBbind344aa, >6CKC_2|Chain... at 99%
6k1sRCSB PDB    PDBbind350aa, >6K1S_2|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
4x60RCSB PDB    PDBbind3XV
4x63RCSB PDB    PDBbind3XV

Entry Information
PDB ID4x61
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameSAM-bound PRMT5-MEP50 complex
Ligand Name3XV
EC.Number E.C.2.1.1.320
Resolution 2.85(Å)
Affinity (Kd/Ki/IC50)Kd<1nM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) Nat.Chem.Biol. Vol. 11: pp. 432-437
Ligand Properties
Formula C20H26N5O3
Molecular Weight 384.452
Exact Mass 384.204
No. of atoms 54
No. of bonds 57
Polar Surface Area 100.81
LOGP Value 0.77      (Computed with XLOGP3)
1.05      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O14744  Q9BQA1  
Entrez Gene IDNCBI Entrez Gene ID: 10419  79084  
ASDInformation of known allosteric effects of PDB entries

 
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