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Related entries of code: 5emk
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4x60RCSB PDB    PDBbind350aa, >4X60_2|Chain... *
4x61RCSB PDB    PDBbind350aa, >4X61_2|Chain... at 100%
4x63RCSB PDB    PDBbind350aa, >4X63_2|Chain... at 100%
5emjRCSB PDB    PDBbind350aa, >5EMJ_2|Chain... at 100%
5emlRCSB PDB    PDBbind350aa, >5EML_2|Chain... at 100%
5emmRCSB PDB    PDBbind350aa, >5EMM_2|Chain... at 100%
6ckcRCSB PDB    PDBbind344aa, >6CKC_2|Chain... at 99%
6k1sRCSB PDB    PDBbind350aa, >6K1S_2|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5emk
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePRMT5-MEP50 complex
Ligand Name5QH
EC.Number E.C.2.1.1.320
Resolution 2.52(Å)
Affinity (Kd/Ki/IC50)IC50=13nM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2015) Acs Med.Chem.Lett. Vol. 7: pp. 162-166
Ligand Properties
Formula C24H26N3O2
Molecular Weight 388.482
Exact Mass 388.203
No. of atoms 55
No. of bonds 58
Polar Surface Area 66.66
LOGP Value 2.74      (Computed with XLOGP3)
3.44      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O14744  Q9BQA1  
Entrez Gene IDNCBI Entrez Gene ID: 10419  79084  
ASDInformation of known allosteric effects of PDB entries

 
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