Browse entries in the PDBbind-CN Database

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Related entries of code: 4yik
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1q91RCSB PDB    PDBbind197aa, >1Q91_1|Chain... at 100%
6g22RCSB PDB    PDBbind202aa, >6G22_1|Chain... *
6g2lRCSB PDB    PDBbind202aa, >6G2L_1|Chain... at 100%
6g2mRCSB PDB    PDBbind202aa, >6G2M_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
4yihRCSB PDB    PDBbind2O2
6g22RCSB PDB    PDBbind2O2

Entry Information
PDB ID4yik
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namehuman mitochondrial 5'(3')-deoxyribonucleotidase
Ligand Name2O2
EC.Number E.C.3.1.3
Resolution 1.48(Å)
Affinity (Kd/Ki/IC50)Ki=0.128uM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) Med. Chem. Comm Vol.6: pp.1635-1638
Ligand Properties
Formula C18H22N2O11P2
Molecular Weight 504.322
Exact Mass 504.070
No. of atoms 55
No. of bonds 58
Polar Surface Area 231.11
LOGP Value -3.17      (Computed with XLOGP3)
-0.50      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 13
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9NPB1  
Entrez Gene IDNCBI Entrez Gene ID: 56953  
ASDInformation of known allosteric effects of PDB entries

 
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