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Related entries of code: 6g2l
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1q91RCSB PDB    PDBbind197aa, >1Q91_1|Chain... at 100%
4yikRCSB PDB    PDBbind201aa, >4YIK_1|Chain... at 100%
6g22RCSB PDB    PDBbind202aa, >6G22_1|Chain... *
6g2mRCSB PDB    PDBbind202aa, >6G2M_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID6g2l
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NamemdN
Ligand NameEJ8
EC.Number E.C.3.1.3.-
Resolution 1.48(Å)
Affinity (Kd/Ki/IC50)Ki=68nM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Eur.J.Org.Chem. Vol. : pp. 5144-5153
Ligand Properties
Formula C18H24N2O11P2S
Molecular Weight 538.402
Exact Mass 538.058
No. of atoms 58
No. of bonds 61
Polar Surface Area 256.41
LOGP Value -2.91      (Computed with XLOGP3)
-0.28      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 13
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9NPB1  
Entrez Gene IDNCBI Entrez Gene ID: 56953  
ASDInformation of known allosteric effects of PDB entries

 
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