Browse entries in the PDBbind-CN Database

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Related entries of code: 6g2m
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1q91RCSB PDB    PDBbind197aa, >1Q91_1|Chain... at 100%
4yikRCSB PDB    PDBbind201aa, >4YIK_1|Chain... at 100%
6g22RCSB PDB    PDBbind202aa, >6G22_1|Chain... *
6g2lRCSB PDB    PDBbind202aa, >6G2L_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
6g2nRCSB PDB    PDBbindO84

Entry Information
PDB ID6g2m
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NamemdN
Ligand NameO84
EC.Number E.C.3.1.3.-
Resolution 1.37(Å)
Affinity (Kd/Ki/IC50)Ki=15.1nM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Eur.J.Org.Chem. Vol. : pp.5144-5153
Ligand Properties
Formula C19H24N2O11P2
Molecular Weight 518.348
Exact Mass 518.086
No. of atoms 58
No. of bonds 61
Polar Surface Area 231.11
LOGP Value -3.01      (Computed with XLOGP3)
-0.46      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 13
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9NPB1  
Entrez Gene IDNCBI Entrez Gene ID: 56953  
ASDInformation of known allosteric effects of PDB entries

 
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