Browse entries in the PDBbind-CN Database

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Related entries of code: 4ymb
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1vsoRCSB PDB    PDBbind257aa, >1VSO_1|Chain... at 99%
2f34RCSB PDB    PDBbind258aa, >2F34_1|Chains... *
2f35RCSB PDB    PDBbind258aa, >2F35_1|Chains... at 100%
2pbwRCSB PDB    PDBbind257aa, >2PBW_1|Chains... at 99%
2wkyRCSB PDB    PDBbind258aa, >2WKY_1|Chains... at 99%
2znsRCSB PDB    PDBbind256aa, >2ZNS_1|Chain... at 98%
2zntRCSB PDB    PDBbind256aa, >2ZNT_1|Chain... at 98%
2znuRCSB PDB    PDBbind256aa, >2ZNU_1|Chain... at 98%
3fuzRCSB PDB    PDBbind256aa, >3FUZ_1|Chains... at 98%
3fv1RCSB PDB    PDBbind256aa, >3FV1_1|Chains... at 98%
3fv2RCSB PDB    PDBbind256aa, >3FV2_1|Chains... at 98%
3fvgRCSB PDB    PDBbind256aa, >3FVG_1|Chains... at 98%
3fvkRCSB PDB    PDBbind256aa, >3FVK_1|Chains... at 98%
3fvnRCSB PDB    PDBbind256aa, >3FVN_1|Chains... at 98%
3gbaRCSB PDB    PDBbind257aa, >3GBA_1|Chains... at 99%
3gbbRCSB PDB    PDBbind257aa, >3GBB_1|Chains... at 99%
3s2vRCSB PDB    PDBbind257aa, >3S2V_1|Chains... at 99%
4dldRCSB PDB    PDBbind257aa, >4DLD_1|Chains... at 99%
4e0xRCSB PDB    PDBbind257aa, >4E0X_1|Chains... at 99%
4qf9RCSB PDB    PDBbind257aa, >4QF9_1|Chains... at 99%
5m2vRCSB PDB    PDBbind257aa, >5M2V_1|Chains... at 99%
5nebRCSB PDB    PDBbind257aa, >5NEB_1|Chains... at 99%
5nf5RCSB PDB    PDBbind257aa, >5NF5_1|Chains... at 99%
6fz4RCSB PDB    PDBbind257aa, >6FZ4_1|Chain... at 99%
6sbtRCSB PDB    PDBbind257aa, >6SBT_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID4ymb
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Nameligand-binding domain of GluK1
Ligand Name4E7
EC.Number E.C.-.-.-.-
Resolution 1.93(Å)
Affinity (Kd/Ki/IC50)Ki=0.62uM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) J.Med.Chem. Vol. 58: pp. 6131-6150
Ligand Properties
Formula C15H20NO4
Molecular Weight 278.324
Exact Mass 278.139
No. of atoms 40
No. of bonds 41
Polar Surface Area 91.21
LOGP Value 1.86      (Computed with XLOGP3)
2.48      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P22756  
Entrez Gene IDNCBI Entrez Gene ID: 29559  
ASDInformation of known allosteric effects of PDB entries
 
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