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Related entries of code: 5neb
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1vsoRCSB PDB    PDBbind257aa, >1VSO_1|Chain... at 99%
2f34RCSB PDB    PDBbind258aa, >2F34_1|Chains... *
2f35RCSB PDB    PDBbind258aa, >2F35_1|Chains... at 100%
2pbwRCSB PDB    PDBbind257aa, >2PBW_1|Chains... at 99%
2wkyRCSB PDB    PDBbind258aa, >2WKY_1|Chains... at 99%
2znsRCSB PDB    PDBbind256aa, >2ZNS_1|Chain... at 98%
2zntRCSB PDB    PDBbind256aa, >2ZNT_1|Chain... at 98%
2znuRCSB PDB    PDBbind256aa, >2ZNU_1|Chain... at 98%
3fuzRCSB PDB    PDBbind256aa, >3FUZ_1|Chains... at 98%
3fv1RCSB PDB    PDBbind256aa, >3FV1_1|Chains... at 98%
3fv2RCSB PDB    PDBbind256aa, >3FV2_1|Chains... at 98%
3fvgRCSB PDB    PDBbind256aa, >3FVG_1|Chains... at 98%
3fvkRCSB PDB    PDBbind256aa, >3FVK_1|Chains... at 98%
3fvnRCSB PDB    PDBbind256aa, >3FVN_1|Chains... at 98%
3gbaRCSB PDB    PDBbind257aa, >3GBA_1|Chains... at 99%
3gbbRCSB PDB    PDBbind257aa, >3GBB_1|Chains... at 99%
3s2vRCSB PDB    PDBbind257aa, >3S2V_1|Chains... at 99%
4dldRCSB PDB    PDBbind257aa, >4DLD_1|Chains... at 99%
4e0xRCSB PDB    PDBbind257aa, >4E0X_1|Chains... at 99%
4qf9RCSB PDB    PDBbind257aa, >4QF9_1|Chains... at 99%
4ymbRCSB PDB    PDBbind257aa, >4YMB_1|Chains... at 99%
5m2vRCSB PDB    PDBbind257aa, >5M2V_1|Chains... at 99%
5nf5RCSB PDB    PDBbind257aa, >5NF5_1|Chains... at 99%
6fz4RCSB PDB    PDBbind257aa, >6FZ4_1|Chain... at 99%
6sbtRCSB PDB    PDBbind257aa, >6SBT_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5nihRCSB PDB    PDBbind8VE
5o4fRCSB PDB    PDBbind8VE
Entry Information
PDB ID5neb
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameGlutamate receptor ionotropic, kainate 1
Ligand Name8VE
EC.Number E.C.-.-.-.-
Resolution 2.05(Å)
Affinity (Kd/Ki/IC50)Ki=17nM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) ACS Chem Neurosci Vol. 8: pp. 2056-2064
Ligand Properties
Formula C8H12N3O4
Molecular Weight 214.199
Exact Mass 214.083
No. of atoms 27
No. of bonds 28
Polar Surface Area 106.81
LOGP Value -1.44      (Computed with XLOGP3)
-1.67      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 0
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P22756  
Entrez Gene IDNCBI Entrez Gene ID: 29559  
ASDInformation of known allosteric effects of PDB entries
 
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