Browse entries in the PDBbind-CN Database

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Related entries of code: 5d7x
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4uyeRCSB PDB    PDBbind118aa, >4UYE_1|Chains... *
5c7nRCSB PDB    PDBbind116aa, >5C7N_1|Chain... at 97%
5c85RCSB PDB    PDBbind116aa, >5C85_1|Chain... at 97%
5c87RCSB PDB    PDBbind116aa, >5C87_1|Chain... at 97%
5dy7RCSB PDB    PDBbind116aa, >5DY7_1|Chain... at 97%
5dyaRCSB PDB    PDBbind116aa, >5DYA_1|Chain... at 97%
5e3dRCSB PDB    PDBbind116aa, >5E3D_1|Chain... at 97%
5e3gRCSB PDB    PDBbind116aa, >5E3G_1|Chain... at 97%
5em3RCSB PDB    PDBbind116aa, >5EM3_1|Chain... at 97%
5eprRCSB PDB    PDBbind116aa, >5EPR_1|Chain... at 97%
5epsRCSB PDB    PDBbind116aa, >5EPS_1|Chain... at 97%
5eq1RCSB PDB    PDBbind116aa, >5EQ1_1|Chain... at 97%
5etbRCSB PDB    PDBbind116aa, >5ETB_1|Chain... at 97%
5evaRCSB PDB    PDBbind116aa, >5EVA_1|Chain... at 97%
5ewdRCSB PDB    PDBbind116aa, >5EWD_1|Chain... at 97%
5ewhRCSB PDB    PDBbind116aa, >5EWH_1|Chain... at 97%
5mwgRCSB PDB    PDBbind116aa, >5MWG_1|Chains... at 97%
5mwhRCSB PDB    PDBbind116aa, >5MWH_1|Chains... at 97%
5mwzRCSB PDB    PDBbind116aa, >5MWZ_1|Chain... at 97%
5mygRCSB PDB    PDBbind116aa, >5MYG_1|Chains... at 97%
5o4sRCSB PDB    PDBbind116aa, >5O4S_1|Chains... at 97%
5o4tRCSB PDB    PDBbind116aa, >5O4T_1|Chain... at 97%
5o55RCSB PDB    PDBbind116aa, >5O55_1|Chain... at 97%
5o5aRCSB PDB    PDBbind116aa, >5O5A_1|Chain... at 97%
5o5fRCSB PDB    PDBbind116aa, >5O5F_1|Chain... at 97%
5o5hRCSB PDB    PDBbind116aa, >5O5H_1|Chain... at 97%
5ov8RCSB PDB    PDBbind116aa, >5OV8_1|Chains... at 97%
5owaRCSB PDB    PDBbind116aa, >5OWA_1|Chains... at 97%
5t4uRCSB PDB    PDBbind116aa, >5T4U_1|Chain... at 97%
5t4vRCSB PDB    PDBbind116aa, >5T4V_1|Chain... at 97%
6ekqRCSB PDB    PDBbind116aa, >6EKQ_1|Chains... at 97%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5d7x
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namehuman BRPF1 bromodomain
Ligand NameXZ8
EC.Number E.C.-.-.-.-
Resolution 1.35(Å)
Affinity (Kd/Ki/IC50)Kd=15uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) J.Med.Chem. Vol. 59: pp. 3087-3097
Ligand Properties
Formula C14H11N3O2
Molecular Weight 253.256
Exact Mass 253.085
No. of atoms 30
No. of bonds 32
Polar Surface Area 63.79
LOGP Value 2.21      (Computed with XLOGP3)
1.90      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P55201  
Entrez Gene IDNCBI Entrez Gene ID: 7862  
ASDInformation of known allosteric effects of PDB entries
 
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