Browse entries in the PDBbind-CN Database

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Related entries of code: 6ekq
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4uyeRCSB PDB    PDBbind118aa, >4UYE_1|Chains... *
5c7nRCSB PDB    PDBbind116aa, >5C7N_1|Chain... at 97%
5c85RCSB PDB    PDBbind116aa, >5C85_1|Chain... at 97%
5c87RCSB PDB    PDBbind116aa, >5C87_1|Chain... at 97%
5d7xRCSB PDB    PDBbind116aa, >5D7X_1|Chain... at 97%
5dy7RCSB PDB    PDBbind116aa, >5DY7_1|Chain... at 97%
5dyaRCSB PDB    PDBbind116aa, >5DYA_1|Chain... at 97%
5e3dRCSB PDB    PDBbind116aa, >5E3D_1|Chain... at 97%
5e3gRCSB PDB    PDBbind116aa, >5E3G_1|Chain... at 97%
5em3RCSB PDB    PDBbind116aa, >5EM3_1|Chain... at 97%
5eprRCSB PDB    PDBbind116aa, >5EPR_1|Chain... at 97%
5epsRCSB PDB    PDBbind116aa, >5EPS_1|Chain... at 97%
5eq1RCSB PDB    PDBbind116aa, >5EQ1_1|Chain... at 97%
5etbRCSB PDB    PDBbind116aa, >5ETB_1|Chain... at 97%
5evaRCSB PDB    PDBbind116aa, >5EVA_1|Chain... at 97%
5ewdRCSB PDB    PDBbind116aa, >5EWD_1|Chain... at 97%
5ewhRCSB PDB    PDBbind116aa, >5EWH_1|Chain... at 97%
5mwgRCSB PDB    PDBbind116aa, >5MWG_1|Chains... at 97%
5mwhRCSB PDB    PDBbind116aa, >5MWH_1|Chains... at 97%
5mwzRCSB PDB    PDBbind116aa, >5MWZ_1|Chain... at 97%
5mygRCSB PDB    PDBbind116aa, >5MYG_1|Chains... at 97%
5o4sRCSB PDB    PDBbind116aa, >5O4S_1|Chains... at 97%
5o4tRCSB PDB    PDBbind116aa, >5O4T_1|Chain... at 97%
5o55RCSB PDB    PDBbind116aa, >5O55_1|Chain... at 97%
5o5aRCSB PDB    PDBbind116aa, >5O5A_1|Chain... at 97%
5o5fRCSB PDB    PDBbind116aa, >5O5F_1|Chain... at 97%
5o5hRCSB PDB    PDBbind116aa, >5O5H_1|Chain... at 97%
5ov8RCSB PDB    PDBbind116aa, >5OV8_1|Chains... at 97%
5owaRCSB PDB    PDBbind116aa, >5OWA_1|Chains... at 97%
5t4uRCSB PDB    PDBbind116aa, >5T4U_1|Chain... at 97%
5t4vRCSB PDB    PDBbind116aa, >5T4V_1|Chain... at 97%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5mwgRCSB PDB    PDBbindWGX
Entry Information
PDB ID6ekq
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NamePeregrin
Ligand NameWGX
EC.Number E.C.-.-.-.-
Resolution 1.65(Å)
Affinity (Kd/Ki/IC50)Kd=3.5uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Eur J Med Chem Vol. 155: pp. 337-352
Ligand Properties
Formula C17H25N4O2S
Molecular Weight 349.471
Exact Mass 349.170
No. of atoms 49
No. of bonds 51
Polar Surface Area 100.7
LOGP Value 3.26      (Computed with XLOGP3)
3.70      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P55201  
Entrez Gene IDNCBI Entrez Gene ID: 7862  
ASDInformation of known allosteric effects of PDB entries
 
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