Browse entries in the PDBbind-CN Database

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Related entries of code: 5kcb
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5katRCSB PDB    PDBbind165aa, >5KAT_1|Chain... *
5kauRCSB PDB    PDBbind165aa, >5KAU_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3pm1RCSB PDB    PDBbindET
3v78RCSB PDB    PDBbindET
3vvyRCSB PDB    PDBbindET
5er5RCSB PDB    PDBbindET

Entry Information
PDB ID5kcb
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Nameprotein containing GyrI-like domain SAV2435
Ligand NameET
EC.Number E.C.-.-.-.-
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)Kd=0.99uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Biochemistry Vol. 55: pp. 4850-4863
Ligand Properties
Formula C21H21N3
Molecular Weight 315.412
Exact Mass 315.174
No. of atoms 45
No. of bonds 48
Polar Surface Area 55.28
LOGP Value 3.94      (Computed with XLOGP3)
5.67      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 0
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A0A0H3JRN6  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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