Browse entries in the PDBbind-CN Database

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Related entries of code: 5ogb
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2cbsRCSB PDB    PDBbind137aa, >2CBS_1|Chain... at 100%
2fr3RCSB PDB    PDBbind137aa, >2FR3_1|Chain... at 100%
2g78RCSB PDB    PDBbind137aa, >2G78_1|Chain... at 98%
2g79RCSB PDB    PDBbind137aa, >2G79_1|Chain... at 98%
3cbsRCSB PDB    PDBbind137aa, >3CBS_1|Chain... at 100%
3cwkRCSB PDB    PDBbind137aa, >3CWK_1|Chain... at 96%
4i9rRCSB PDB    PDBbind137aa, >4I9R_1|Chain... at 95%
4i9sRCSB PDB    PDBbind137aa, >4I9S_1|Chain... at 96%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5ogb
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameCellular retinoic acid-binding protein 2
Ligand Name9U5
EC.Number E.C.-.-.-.-
Resolution 1.8(Å)
Affinity (Kd/Ki/IC50)Kd=34nM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Acs Chem.Biol. Vol. 14: pp. 369-377
Ligand Properties
Formula C23H23NO2
Molecular Weight 345.434
Exact Mass 345.173
No. of atoms 49
No. of bonds 51
Polar Surface Area 40.54
LOGP Value 6.78      (Computed with XLOGP3)
4.87      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P29373  
Entrez Gene IDNCBI Entrez Gene ID: 1382  
ASDInformation of known allosteric effects of PDB entries
 
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