Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5td7
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6ufnRCSB PDB    PDBbind676aa, >6UFN_1|Chain... at 99%
6ufoRCSB PDB    PDBbind676aa, >6UFO_1|Chain... at 99%
6uhuRCSB PDB    PDBbind676aa, >6UHU_1|Chain... at 99%
6uhvRCSB PDB    PDBbind676aa, >6UHV_1|Chain... at 99%
6uiiRCSB PDB    PDBbind676aa, >6UII_1|Chain... at 100%
6uilRCSB PDB    PDBbind676aa, >6UIL_1|Chain... at 99%
6uimRCSB PDB    PDBbind676aa, >6UIM_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
4zumRCSB PDB    PDBbindFKS
5efhRCSB PDB    PDBbindFKS
6phzRCSB PDB    PDBbindFKS
6uilRCSB PDB    PDBbindFKS

Entry Information
PDB ID5td7
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameHistone deacetylase 10
Ligand NameFKS
EC.Number E.C.-.-.-.-
Resolution 2.85(Å)
Affinity (Kd/Ki/IC50)IC50=1.7uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Nat Commun Vol. 8: pp. 15368-15368
Ligand Properties
Formula C10H23F3N2O2
Molecular Weight 260.297
Exact Mass 260.171
No. of atoms 40
No. of bonds 39
Polar Surface Area 84.71
LOGP Value 0.37      (Computed with XLOGP3)
-1.01      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 11
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): F1QCV2  
Entrez Gene IDNCBI Entrez Gene ID: 327253  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2025    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com