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Related entries of code: 6ufn
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5td7RCSB PDB    PDBbind678aa, >5TD7_1|Chain... *
6ufoRCSB PDB    PDBbind676aa, >6UFO_1|Chain... at 99%
6uhuRCSB PDB    PDBbind676aa, >6UHU_1|Chain... at 99%
6uhvRCSB PDB    PDBbind676aa, >6UHV_1|Chain... at 99%
6uiiRCSB PDB    PDBbind676aa, >6UII_1|Chain... at 100%
6uilRCSB PDB    PDBbind676aa, >6UIL_1|Chain... at 99%
6uimRCSB PDB    PDBbind676aa, >6UIM_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID6ufn
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameDanio rerio Histone Deacetylase 10
Ligand NameQ6M
EC.Number E.C.-.-.-.-
Resolution 2.7(Å)
Affinity (Kd/Ki/IC50)IC50=2.3uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Biochemistry Vol. 58: pp. 4957-4969
Ligand Properties
Formula C10H26N2O2
Molecular Weight 206.326
Exact Mass 206.199
No. of atoms 40
No. of bonds 39
Polar Surface Area 84.71
LOGP Value -0.38      (Computed with XLOGP3)
-1.56      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 11
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): F1QCV2  
Entrez Gene IDNCBI Entrez Gene ID: 327253  
ASDInformation of known allosteric effects of PDB entries

 
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