Browse entries in the PDBbind-CN Database

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Related entries of code: 6uii
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5td7RCSB PDB    PDBbind678aa, >5TD7_1|Chain... *
6ufnRCSB PDB    PDBbind676aa, >6UFN_1|Chain... at 99%
6ufoRCSB PDB    PDBbind676aa, >6UFO_1|Chain... at 99%
6uhuRCSB PDB    PDBbind676aa, >6UHU_1|Chain... at 99%
6uhvRCSB PDB    PDBbind676aa, >6UHV_1|Chain... at 99%
6uilRCSB PDB    PDBbind676aa, >6UIL_1|Chain... at 99%
6uimRCSB PDB    PDBbind676aa, >6UIM_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
4zunRCSB PDB    PDBbindSS9
6phrRCSB PDB    PDBbindSS9

Entry Information
PDB ID6uii
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameDanio rerio Histone Deacetylase 10
Ligand NameSS9
EC.Number E.C.-.-.-.-
Resolution 2.65(Å)
Affinity (Kd/Ki/IC50)IC50=370nM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Biochemistry Vol. 58: pp. 4957-4969
Ligand Properties
Formula C8H22N2S
Molecular Weight 178.339
Exact Mass 178.150
No. of atoms 33
No. of bonds 32
Polar Surface Area 83.05
LOGP Value 0.57      (Computed with XLOGP3)
-0.72      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 0
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 2
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): F1QCV2  
Entrez Gene IDNCBI Entrez Gene ID: 327253  
ASDInformation of known allosteric effects of PDB entries

 
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