Browse entries in the PDBbind-CN Database

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Related entries of code: 5xpl
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1osvRCSB PDB    PDBbind12aa, >1OSV:E|PDBID|CHAIN|... at 100%
1p93RCSB PDB    PDBbind12aa, >1P93:H|PDBID|CHAIN|... at 100%
1t63RCSB PDB    PDBbind14aa, >1T63:B|PDBID|CHAIN|... at 100%
2ao6RCSB PDB    PDBbind25aa, >2AO6:B|PDBID|CHAIN|... *
3k22RCSB PDB    PDBbind12aa, >3K22:H|PDBID|CHAIN|... at 100%
3k23RCSB PDB    PDBbind12aa, >3K23:F|PDBID|CHAIN|... at 100%
3l0eRCSB PDB    PDBbind12aa, >3L0E:B|PDBID|CHAIN|... at 100%
4csjRCSB PDB    PDBbind13aa, >4CSJ:B|PDBID|CHAIN|... at 100%
4p6wRCSB PDB    PDBbind12aa, >4P6W:B|PDBID|CHAIN|... at 91%
4p6xRCSB PDB    PDBbind14aa, >4P6X:L|PDBID|CHAIN|... at 100%
5h1eRCSB PDB    PDBbind13aa, >5H1E:C|PDBID|CHAIN|... at 100%
5ickRCSB PDB    PDBbind11aa, >5ICK:D|PDBID|CHAIN|... at 100%
5q17RCSB PDB    PDBbind12aa, >5Q17:B|PDBID|CHAIN|... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5xpl
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameVitamin D Receptor
Ligand Name8C9
EC.Number E.C.-.-.-.-
Resolution 2.05(Å)
Affinity (Kd/Ki/IC50)IC50=20nM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2017) J. Med. Chem. Vol. 60: pp. 8394-8406
Ligand Properties
Formula C35H50O4
Molecular Weight 534.769
Exact Mass 534.371
No. of atoms 89
No. of bonds 92
Polar Surface Area 77.76
LOGP Value 7.36      (Computed with XLOGP3)
7.94      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 13
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P13053  Q15596  
Entrez Gene IDNCBI Entrez Gene ID: 24873  10499  
ASDInformation of known allosteric effects of PDB entries

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