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Related entries of code: 5ypw
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5yumRCSB PDB    PDBbind98aa, >5YUM_1|Chain... at 100%
5ypyRCSB PDB    PDBbind98aa, >5YPY_1|Chains... at 100%
5yppRCSB PDB    PDBbind98aa, >5YPP_1|Chains... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1t4sRCSB PDB    PDBbindVAL
5ypyRCSB PDB    PDBbindVAL
5yppRCSB PDB    PDBbindVAL
Entry Information
PDB ID5ypw
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameAcetolactate synthase isozyme 1 small subunit
Ligand NameVAL
EC.Number E.C.2.2.1.6
Resolution 2.3(Å)
Affinity (Kd/Ki/IC50)Kd=23uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Biochemistry Vol. 58: pp. 1992-2008
Ligand Properties
Formula C5H12NO2
Molecular Weight 118.154
Exact Mass 118.087
No. of atoms 20
No. of bonds 19
Polar Surface Area 64.94
LOGP Value -1.15      (Computed with XLOGP3)
-0.66      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 1
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACNo matched UniProt accession number (AC) found!
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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