Browse entries in the PDBbind-CN Database

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Related entries of code: 5ypy
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5yumRCSB PDB    PDBbind98aa, >5YUM_1|Chain... at 100%
5ypwRCSB PDB    PDBbind98aa, >5YPW_1|Chains... at 100%
5yppRCSB PDB    PDBbind98aa, >5YPP_1|Chains... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1t4sRCSB PDB    PDBbindVAL
5ypwRCSB PDB    PDBbindVAL
5yppRCSB PDB    PDBbindVAL

Entry Information
PDB ID5ypy
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameAcetolactate synthase isozyme 1 small subunit
Ligand NameVAL
EC.Number E.C.2.2.1.6
Resolution 1.97(Å)
Affinity (Kd/Ki/IC50)Kd=23uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Biochemistry Vol. 58: pp. 1992-2008
Ligand Properties
Formula C5H12NO2
Molecular Weight 118.154
Exact Mass 118.087
No. of atoms 20
No. of bonds 19
Polar Surface Area 64.94
LOGP Value -1.15      (Computed with XLOGP3)
-0.66      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 1
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P0ADF8  
Entrez Gene IDNCBI Entrez Gene ID: 56816289  61752823  948183  
ASDInformation of known allosteric effects of PDB entries

 
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