Browse entries in the PDBbind-CN Database

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Related entries of code: 6bg5
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5v83RCSB PDB    PDBbind384aa, >5V83_1|Chain... *
5v86RCSB PDB    PDBbind384aa, >5V86_1|Chain... at 99%
5v88RCSB PDB    PDBbind384aa, >5V88_1|Chain... at 99%
6bg3RCSB PDB    PDBbind384aa, >6BG3_1|Chain... at 100%
6p5wRCSB PDB    PDBbind384aa, >6P5W_1|Chain... at 100%
6p5vRCSB PDB    PDBbind384aa, >6P5V_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID6bg5
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameEndolysin, DCN1-like protein 1 chimera
Ligand NameDQD
EC.Number E.C.-.-.-.-
Resolution 1.1(Å)
Affinity (Kd/Ki/IC50)IC50=1uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) J. Med. Chem. Vol. 61: pp. 2680-2693
Ligand Properties
Formula C24H29F3N3O3
Molecular Weight 464.501
Exact Mass 464.216
No. of atoms 62
No. of bonds 65
Polar Surface Area 55.24
LOGP Value 4.79      (Computed with XLOGP3)
5.57      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 1
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q96GG9  P00720  
Entrez Gene IDNCBI Entrez Gene ID: 54165  1258585  
ASDInformation of known allosteric effects of PDB entries
 
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