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Related entries of code: 6p5w
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5v83RCSB PDB    PDBbind384aa, >5V83_1|Chain... *
5v86RCSB PDB    PDBbind384aa, >5V86_1|Chain... at 99%
5v88RCSB PDB    PDBbind384aa, >5V88_1|Chain... at 99%
6bg3RCSB PDB    PDBbind384aa, >6BG3_1|Chain... at 100%
6bg5RCSB PDB    PDBbind384aa, >6BG5_1|Chain... at 100%
6p5vRCSB PDB    PDBbind384aa, >6P5V_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID6p5w
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameLysozyme, DCN1-like protein 1 fusion
Ligand NameO0A
EC.Number E.C.3.2.1.17
Resolution 1.69(Å)
Affinity (Kd/Ki/IC50)IC50=5.1uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) J.Med.Chem. Vol. 62: pp. 8429-8442
Ligand Properties
Formula C28H28N4O2
Molecular Weight 452.548
Exact Mass 452.221
No. of atoms 62
No. of bonds 66
Polar Surface Area 79.18
LOGP Value 5.34      (Computed with XLOGP3)
5.00      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q96GG9  D9IEF7  
Entrez Gene IDNCBI Entrez Gene ID: 54165  
ASDInformation of known allosteric effects of PDB entries
 
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