Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 2vfk
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1fpiRCSB PDB    PDBbindAMP
1ftaRCSB PDB    PDBbindAMP
1pygRCSB PDB    PDBbindAMP
1ua4RCSB PDB    PDBbindAMP
1z6sRCSB PDB    PDBbindAMP
2gmkRCSB PDB    PDBbindAMP
2gsuRCSB PDB    PDBbindAMP
2q8mRCSB PDB    PDBbindAMP
2qrkRCSB PDB    PDBbindAMP
3tdhRCSB PDB    PDBbindAMP
4cs9RCSB PDB    PDBbindAMP
4g0yRCSB PDB    PDBbindAMP
4lqyRCSB PDB    PDBbindAMP
4ozlRCSB PDB    PDBbindAMP
4qfgRCSB PDB    PDBbindAMP
4wypRCSB PDB    PDBbindAMP
4zmfRCSB PDB    PDBbindAMP
5f74RCSB PDB    PDBbindAMP
5klzRCSB PDB    PDBbindAMP
5o3rRCSB PDB    PDBbindAMP
5ofuRCSB PDB    PDBbindAMP
5yz2RCSB PDB    PDBbindAMP
6fclRCSB PDB    PDBbindAMP
7gpbRCSB PDB    PDBbindAMP
8gpbRCSB PDB    PDBbindAMP
6mmoRCSB PDB    PDBbindAMP
6k4rRCSB PDB    PDBbindAMP
5nx9RCSB PDB    PDBbindAMP
6sy7RCSB PDB    PDBbindAMP
Entry Information
PDB ID2vfk
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameProtein kinase A anchoring proteins (AKAP18CD)
Ligand NameAMP
EC.Number E.C.-.-.-.-
Resolution 1.5(Å)
Affinity (Kd/Ki/IC50)Kd=194uM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2008) J.Mol.Biol. Vol. 375: pp. 1329-1343
Ligand Properties
Formula C10H15N5O7P
Molecular Weight 348.229
Exact Mass 348.071
No. of atoms 38
No. of bonds 40
Polar Surface Area 202.82
LOGP Value -3.71      (Computed with XLOGP3)
-1.72      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q6JP77  
Entrez Gene IDNCBI Entrez Gene ID: 361458  
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com