Browse entries in the PDBbind-CN Database

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Related entries of code: 5yz2
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1fpiRCSB PDB    PDBbindAMP
1ftaRCSB PDB    PDBbindAMP
1pygRCSB PDB    PDBbindAMP
1ua4RCSB PDB    PDBbindAMP
1z6sRCSB PDB    PDBbindAMP
2gmkRCSB PDB    PDBbindAMP
2gsuRCSB PDB    PDBbindAMP
2q8mRCSB PDB    PDBbindAMP
2qrkRCSB PDB    PDBbindAMP
2vfkRCSB PDB    PDBbindAMP
3tdhRCSB PDB    PDBbindAMP
4cs9RCSB PDB    PDBbindAMP
4g0yRCSB PDB    PDBbindAMP
4lqyRCSB PDB    PDBbindAMP
4ozlRCSB PDB    PDBbindAMP
4qfgRCSB PDB    PDBbindAMP
4wypRCSB PDB    PDBbindAMP
4zmfRCSB PDB    PDBbindAMP
5f74RCSB PDB    PDBbindAMP
5klzRCSB PDB    PDBbindAMP
5o3rRCSB PDB    PDBbindAMP
5ofuRCSB PDB    PDBbindAMP
6fclRCSB PDB    PDBbindAMP
7gpbRCSB PDB    PDBbindAMP
8gpbRCSB PDB    PDBbindAMP
6mmoRCSB PDB    PDBbindAMP
6k4rRCSB PDB    PDBbindAMP
5nx9RCSB PDB    PDBbindAMP
6sy7RCSB PDB    PDBbindAMP
Entry Information
PDB ID5yz2
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameMagnesium and cobalt efflux protein CorC
Ligand NameAMP
EC.Number E.C.-.-.-.-
Resolution 1.75(Å)
Affinity (Kd/Ki/IC50)Kd=11.3uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Biochem. Biophys. Res. Commun. Vol. 497: pp. 646-651
Ligand Properties
Formula C10H15N5O7P
Molecular Weight 348.229
Exact Mass 348.071
No. of atoms 38
No. of bonds 40
Polar Surface Area 202.82
LOGP Value -3.71      (Computed with XLOGP3)
-1.72      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P0AE78  
Entrez Gene IDNCBI Entrez Gene ID: 61756041  946417  
ASDInformation of known allosteric effects of PDB entries
 
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